View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_106 (Length: 226)
Name: NF12023_low_106
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29952087 - 29952288
Alignment:
| Q |
1 |
ctttccaatgtctaaacatcttttttccatcaacaaggttcgaacccgataccttgcttaagaaatctgagtccttgttctactcagaccagtgtaatgt |
100 |
Q |
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| T |
29952087 |
ctttccaagttctaaccatgttttttccatcaacaaggttcgaacccgataccttgcttaagaaatctgagtccttgttctactcagaccagtgtaatgt |
29952186 |
T |
|
| Q |
101 |
tggtatacaaaatagtactgtgtatagaaaatcttagaagaaatctcttacataatcaatacttttttgacagttcttgaatattcaatactaatattta |
200 |
Q |
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| T |
29952187 |
tggtatacaaaatagtactgtgtatagaaaatcttagaagaaatctcttacataatcaatacttttttgacagttcttgaatattcaatactaatattta |
29952286 |
T |
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| Q |
201 |
ag |
202 |
Q |
| |
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|| |
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|
| T |
29952287 |
ag |
29952288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 14822251 - 14822210
Alignment:
| Q |
21 |
ttttttccatcaacaaggttcgaacccgataccttgcttaag |
62 |
Q |
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| T |
14822251 |
ttttttccatccacaaggttcggacccgagaccttgcttaag |
14822210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 15269258 - 15269217
Alignment:
| Q |
21 |
ttttttccatcaacaaggttcgaacccgataccttgcttaag |
62 |
Q |
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||||||||||| |||||||||| |||||| |||||||||||| |
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| T |
15269258 |
ttttttccatccacaaggttcggacccgagaccttgcttaag |
15269217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17500399 - 17500440
Alignment:
| Q |
21 |
ttttttccatcaacaaggttcgaacccgataccttgcttaag |
62 |
Q |
| |
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||||||||||| |||||||||| |||||| |||||||||||| |
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| T |
17500399 |
ttttttccatccacaaggttcggacccgagaccttgcttaag |
17500440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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