View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_107 (Length: 225)
Name: NF12023_low_107
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 41469882 - 41470073
Alignment:
| Q |
22 |
ctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41469882 |
ctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactcagcat |
41469981 |
T |
|
| Q |
122 |
atacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgcaacttttgattctcctctctg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469982 |
atacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgcaacttttgattctcctctctg |
41470073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 41524535 - 41524671
Alignment:
| Q |
22 |
ctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcat |
121 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||| |||||||||| |
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| T |
41524535 |
ctattcaccttaacttctttcaaaagagcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcat |
41524634 |
T |
|
| Q |
122 |
atacccttgaaagtctctctaagtgaaactcctctct |
158 |
Q |
| |
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||| |||||| ||| |||| ||||||| ||| ||||| |
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| T |
41524635 |
ataaccttgagagtttctccaagtgaagctcttctct |
41524671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 41515611 - 41515723
Alignment:
| Q |
28 |
accttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcatataccc |
127 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| || | || |
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| T |
41515611 |
accttaacttctttcaaaagtgcttcataactttcttgaactttcttccctttctcacaaatctcttctcttttcttaaactcagactcagcgtacaacc |
41515710 |
T |
|
| Q |
128 |
ttgaaagtctctc |
140 |
Q |
| |
|
|||| ||| |||| |
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|
| T |
41515711 |
ttgagagtttctc |
41515723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 41702804 - 41702622
Alignment:
| Q |
22 |
ctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcat |
121 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| |||||| |||||| || | ||||| |||||||| ||||||| ||||||||| |
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| T |
41702804 |
ctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacat---------atttcttctctttttctaaactcaaactcagcat |
41702714 |
T |
|
| Q |
122 |
atacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgcaacttttgattctcctctctg |
213 |
Q |
| |
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| |||||||||| |||| | || || || |||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
41702713 |
gcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctg |
41702622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 41519872 - 41520005
Alignment:
| Q |
48 |
agcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcatatacccttgaaagtctctctaagtga |
147 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||||| ||| || | || ||||| |||| |||| | | | |
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| T |
41519872 |
agcttcataacgttcttgtactttcttccctttctgacaaagttcctctcttttcttaaactcttcctcggcctgtatccttgcaagtttctccatttta |
41519971 |
T |
|
| Q |
148 |
aactcctctctaagcttaagtctctccatttcaa |
181 |
Q |
| |
|
| ||||||| |||||| |||||||||||||||| |
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| T |
41519972 |
agctcctcttgaagctttagtctctccatttcaa |
41520005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 41499787 - 41499872
Alignment:
| Q |
73 |
ttacctttctcacaaatttcctctcttttcttaaactcggactcagcatatacccttgaaagtctctctaagtgaaactcctctct |
158 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||| |||| ||||||||| || |||||| ||||| || ||||||||||||||||| |
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| T |
41499787 |
ttacctttctcaaacatttcttctcttttcttagactcaaactcagcatgtaaccttgagagtctttccaagtgaaactcctctct |
41499872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 41509646 - 41509779
Alignment:
| Q |
48 |
agcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcatatacccttgaaagtctctctaagtga |
147 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||| ||||| |||||| | || ||||| |||| |||| | | | |
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| T |
41509646 |
agcttcataacgttcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctccatttca |
41509745 |
T |
|
| Q |
148 |
aactcctctctaagcttaagtctctccatttcaa |
181 |
Q |
| |
|
| ||||||| |||||| ||||||||||| |||| |
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| T |
41509746 |
agctcctcttgaagctttagtctctccatatcaa |
41509779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 41504252 - 41504365
Alignment:
| Q |
48 |
agcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcggactcagcatatacccttgaaagtctctctaagtga |
147 |
Q |
| |
|
||||||||||||||| | || | |||| |||||||| |||||||||||||||| ||||||| ||||||| || || ||| | |||||||| |||| |
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| T |
41504252 |
agcttcataactttcatgtattatcttttctttctcaacaatttcctctcttttcctaaactcagactcagaatgtaacctcaagagtctctccgtgtga |
41504351 |
T |
|
| Q |
148 |
aactcctctctaag |
161 |
Q |
| |
|
|||||||||||||| |
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|
| T |
41504352 |
aactcctctctaag |
41504365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 41548184 - 41548259
Alignment:
| Q |
35 |
cttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactc |
110 |
Q |
| |
|
|||| ||||| ||||| | ||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |
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|
| T |
41548184 |
cttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactc |
41548259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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