View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_108 (Length: 224)

Name: NF12023_low_108
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_108
NF12023_low_108
[»] chr2 (6 HSPs)
chr2 (1-207)||(33037881-33038087)
chr2 (1-207)||(33020043-33020249)
chr2 (1-205)||(33026384-33026588)
chr2 (4-108)||(33023912-33024016)
chr2 (139-172)||(7160913-7160946)
chr2 (136-172)||(7200134-7200170)
[»] scaffold1004 (1 HSPs)
scaffold1004 (1-181)||(1873-2053)
[»] scaffold0760 (1 HSPs)
scaffold0760 (1-181)||(4368-4548)
[»] chr6 (1 HSPs)
chr6 (1-189)||(24417619-24417804)
[»] chr3 (15 HSPs)
chr3 (138-181)||(763705-763748)
chr3 (138-181)||(9585279-9585322)
chr3 (1-175)||(783949-784123)
chr3 (138-193)||(9587317-9587372)
chr3 (138-200)||(44001479-44001541)
chr3 (1-57)||(9587456-9587512)
chr3 (139-174)||(2456106-2456141)
chr3 (1-52)||(9608626-9608677)
chr3 (138-181)||(43991827-43991870)
chr3 (139-181)||(1437864-1437906)
chr3 (14-55)||(771769-771810)
chr3 (8-60)||(763823-763875)
chr3 (139-175)||(771655-771691)
chr3 (136-180)||(2659297-2659341)
chr3 (136-164)||(7430652-7430680)
[»] chr7 (2 HSPs)
chr7 (139-189)||(27755555-27755605)
chr7 (139-174)||(24723213-24723248)
[»] chr1 (2 HSPs)
chr1 (136-181)||(51829632-51829677)
chr1 (136-176)||(51832229-51832269)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 33037881 - 33038087
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33037881 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcggtggcactgtta 33037980  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcctgatattgagaa 200  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33037981 attggttgtcgttagacgaagtgagttctttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaaacgctttcgctgcctgatattgagaa 33038080  T
Q  201 tgatcct 207  Q
    |||||||    
T  33038081 tgatcct 33038087  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 33020043 - 33020249
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||| |||||||| ||||    
T  33020043 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcacagtta 33020142  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcctgatattgagaa 200  Q
    |||||||| | || || ||  ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||    
T  33020143 attggttggcattcgaagatgtgagttctccgtgtgtcattgtttctcttgatttggagaaggagtcgtatcaaacgtttttgctgcctgatttcgagaa 33020242  T
Q  201 tgatcct 207  Q
     ||||||    
T  33020243 ggatcct 33020249  T

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Target: chr2; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 33026384 - 33026588
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  | | | |||||||||| | |||||||||||||    
T  33026384 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttttgagtggcactgtta 33026483  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcctgatattgagaa 200  Q
    ||||| ||||||| ||| |  |||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  33026484 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccagattttgagaa 33026583  T
Q  201 tgatc 205  Q
     ||||    
T  33026584 ggatc 33026588  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 33023912 - 33024016
Alignment:
Q  4 gttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgttaatt 103  Q
    ||||||||||||| |||| |||| ||| ||||||| ||| |||||||||||| |||| ||||||||||||  ||||||||||| ||| ||| ||||||||    
T  33023912 gttcatactttggatacgaatacatggtgaaggatgccaaacttcccatattttggctcgttttgtgggttgggaatatttgtgagtcgcaatgttaatt 33024011  T
Q  104 ggttg 108  Q
    |||||    
T  33024012 ggttg 33024016  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 7160946 - 7160913
Alignment:
Q  139 attgtttctcttgatttggagaaggagtcgtatc 172  Q
    ||||||||||||||||||||||||||||| ||||    
T  7160946 attgtttctcttgatttggagaaggagtcttatc 7160913  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 7200170 - 7200134
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagtcgtatc 172  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  7200170 gtcattgtttctcttgatttggagaatgagtcttatc 7200134  T

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Target: scaffold1004 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1873 - 2053
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    ||||||||||||||||||||| || |||||| || |||||  |||||||||||| || | ||||| |||||||  ||||||||||| | ||||| |||||    
T  1873 agtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggcaatgtta 1972  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    |||||||| | ||||| |   ||| ||||| ||| |||||||||||||||||||||  ||| ||||| ||||||| |||||    
T  1973 attggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttt 2053  T

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Target: scaffold0760 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 4368 - 4548
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    ||||||||||||||||||||| || |||||| || |||||  |||||||||||| || | ||||| |||||||  ||||||||||| | ||||| |||||    
T  4368 agtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggcaatgtta 4467  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    |||||||| | ||||| |   ||| ||||| ||| |||||||||||||||||||||  ||| ||||| ||||||| |||||    
T  4468 attggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttt 4548  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 24417804 - 24417619
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| |||||||||||||||| ||| |||   | |||  ||||||||||| ||||||||| |||    
T  24417804 agtgttcataccctgggtacagattcttggagaacgatacaagacttcccatattctcgccagttacatcggttgggaatatttgtgagtggcactatta 24417705  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcct 189  Q
    ||||||||  | |||||||  || |||||| ||   |||||||||||||||||||||| || ||||| ||| ||  |||| ||||||||    
T  24417704 attggttggtggtagacga--tg-gttcttcgtttttcattgtttctcttgatttggaaaatgagtcatataaacggcttgcgctgcct 24417619  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 763748 - 763705
Alignment:
Q  138 cattgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  763748 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 763705  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 9585322 - 9585279
Alignment:
Q  138 cattgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  9585322 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 9585279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 784123 - 783949
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcagtggcactgtta 100  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||||||||||   |  |  |  |||| | ||||| ||||||||  |||    
T  784123 agtgtttatactttgggtaccgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgagtggcaccatta 784024  T
Q  101 attggttgtcgttagacgagttgagttctttgtgcgtcattgtttctcttgatttggagaaggagtcgtatcaaa 175  Q
    |||||||| | |  || |     |||||||||   |||||||||||||||||||||||||| |||||||||||||    
T  784023 attggttgacatatgatgcaagtagttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaa 783949  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 9587372 - 9587317
Alignment:
Q  138 cattgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcctgata 193  Q
    |||||||||||||||||||||||| |||||||||||||  |||| |||||| ||||    
T  9587372 cattgtttctcttgatttggagaacgagtcgtatcaaaatcttttgctgccagata 9587317  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 44001479 - 44001541
Alignment:
Q  138 cattgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcctgatattgagaa 200  Q
    |||||||||||||||| | || |||||||| ||||||  |||||||||||||||| |||||||    
T  44001479 cattgtttctcttgatcttgaaaaggagtcatatcaacagctttcgctgcctgattttgagaa 44001541  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9587512 - 9587456
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattct 57  Q
    |||||| |||||||||||||  |||||||||| ||||| | ||||||||||||||||    
T  9587512 agtgtttatactttgggtaccaatacttggaggaggatccaagacttcccatattct 9587456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 2456106 - 2456141
Alignment:
Q  139 attgtttctcttgatttggagaaggagtcgtatcaa 174  Q
    ||||||||||||||||||||||||||||| ||||||    
T  2456106 attgtttctcttgatttggagaaggagtcatatcaa 2456141  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9608677 - 9608626
Alignment:
Q  1 agtgttcatactttgggtacggatacttggagaaggataccagacttcccat 52  Q
    ||||||||||||||||| || |||  |||||||||||||| |||||||||||    
T  9608677 agtgttcatactttgggcactgattattggagaaggatacaagacttcccat 9608626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 43991827 - 43991870
Alignment:
Q  138 cattgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||    
T  43991827 cattgtttctcttgatttggagacggagtcttatcaaaagcttt 43991870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 1437864 - 1437906
Alignment:
Q  139 attgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||    
T  1437864 attgtttctcttgatttagagaaggagacgtatcaaaagcttt 1437906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 771810 - 771769
Alignment:
Q  14 tgggtacggatacttggagaaggataccagacttcccatatt 55  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  771810 tgggtacagattcttggagaaggatacaagacttcccatatt 771769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 763875 - 763823
Alignment:
Q  8 atactttgggtacggatacttggagaaggataccagacttcccatattctggc 60  Q
    ||||| ||||||||||| ||||||| ||||||| |||||| ||||||| ||||    
T  763875 atactctgggtacggattcttggaggaggatacaagacttaccatattatggc 763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 771691 - 771655
Alignment:
Q  139 attgtttctcttgatttggagaaggagtcgtatcaaa 175  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  771691 attgtttctcttgatttggagaatgagtcatatcaaa 771655  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 2659341 - 2659297
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagtcgtatcaaacgctt 180  Q
    |||||| | ||||||||||| ||||||||||||||||||| ||||    
T  2659341 gtcattatatctcttgatttagagaaggagtcgtatcaaaagctt 2659297  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 7430680 - 7430652
Alignment:
Q  136 gtcattgtttctcttgatttggagaagga 164  Q
    |||||||||||||||||||||||||||||    
T  7430680 gtcattgtttctcttgatttggagaagga 7430652  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 27755555 - 27755605
Alignment:
Q  139 attgtttctcttgatttggagaaggagtcgtatcaaacgctttcgctgcct 189  Q
    |||||||||||||||||||||||||||| |||| ||| |||| ||||||||    
T  27755555 attgtttctcttgatttggagaaggagttgtatgaaaagcttgcgctgcct 27755605  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 24723213 - 24723248
Alignment:
Q  139 attgtttctcttgatttggagaaggagtcgtatcaa 174  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24723213 attgtttctcttgatttggagaaggagtcttatcaa 24723248  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 51829632 - 51829677
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagtcgtatcaaacgcttt 181  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||    
T  51829632 gtcattgtttcttttgatttacagaaggagtcgtatcaaacgcttt 51829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 51832229 - 51832269
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagtcgtatcaaac 176  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  51832229 gtcattgtttctctcgatttagaaaaggagtcgtatcaaac 51832269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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