View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_11 (Length: 548)
Name: NF12023_low_11
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_11 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 265 - 536
Target Start/End: Original strand, 8772406 - 8772677
Alignment:
| Q |
265 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaattagctag |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8772406 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttcccaattgagtcttaaattagctag |
8772505 |
T |
|
| Q |
365 |
ccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagcagagtagaaacaagactgcgatgacggttgttgtccat |
464 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8772506 |
ccaaaaattataagacaataggaaactaaatatatcagcagccagattcaactagtttgagcagagtagaaacaagactgcgatgactgttgttgtccat |
8772605 |
T |
|
| Q |
465 |
aaccagcaacattcatgacttgtgctaagaggccaacacaggaagttgatgattcaccaccatgatgtccat |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
8772606 |
aaccagcaacattcatgacttgtgccaagagcccaacacaggaagttgatgattcaccaccatgaagtccat |
8772677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 8772254 - 8772153
Alignment:
| Q |
1 |
tcaccatggaagggtagattgagtttattttccatctaaattgtaacccatggtagccacaatacttgactcaattacgagtatttaatatgccattaat |
100 |
Q |
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||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| || |||||| |
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| T |
8772254 |
tcaccatggcagggtagattgagtttactttccatttaaattgtatcccatggtagccacaatacttggttcaattacgagtatttaatacgctattaat |
8772155 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
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|| |
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|
| T |
8772154 |
ac |
8772153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 276 - 536
Target Start/End: Complemental strand, 19722014 - 19721754
Alignment:
| Q |
276 |
ttgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaattagctagccaaatattat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
19722014 |
ttgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaacttttcctattgagtcttaaattagctagccaaaaattat |
19721915 |
T |
|
| Q |
376 |
aagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaaca |
475 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19721914 |
aagacaataggaaaataaatatatcagcagccagcttcaatcaaattgagcagagtagaaacaagactgcgatgattgttgttgtccataaccagcaaca |
19721815 |
T |
|
| Q |
476 |
ttcatgacttgtgctaagaggccaacacaggaagttgatgattcaccaccatgatgtccat |
536 |
Q |
| |
|
||||||| || ||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
19721814 |
ttcatgatttatgccaagagcccaacacaggaagttgatgattcaccaccatgaagtccat |
19721754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 19722060 - 19722161
Alignment:
| Q |
1 |
tcaccatggaagggtagattgagtttattttccatctaaattgtaacccatggtagccacaatacttgactcaattacgagtatttaatatgccattaat |
100 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
19722060 |
tcaccatggcagcgtagattgagtttactttccatctaaattgtagcccatggtagccacagtacttgactcaattacgagtatttaatacgctattaat |
19722159 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
|
|| |
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|
| T |
19722160 |
ac |
19722161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 19722261 - 19722369
Alignment:
| Q |
126 |
tttattaccattgaaaaccgtttttcataggaggtt--ctattataaaaagaaaattttgaatttgnnnnnnntttaaattgaaccatcgaaccatgtaa |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
19722261 |
tttattatcattgaaaaccgtttttcataggaggttcactattataaaaagaaaattttaaatttgaaaaaaaattaaattgaaccatcgaaccatgtaa |
19722360 |
T |
|
| Q |
224 |
atgtaagtg |
232 |
Q |
| |
|
||||||||| |
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|
| T |
19722361 |
atgtaagtg |
19722369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 35808013 - 35808065
Alignment:
| Q |
372 |
ttataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
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|
| T |
35808013 |
ttataagacaataggaaactaaatatatcagctgccaacttcaatcagtttga |
35808065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 265 - 536
Target Start/End: Complemental strand, 7558310 - 7558027
Alignment:
| Q |
265 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaaca------------gagagaactttccctattgagtct |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
7558310 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaactttttgttcaaaaacattttgttcaacagagagaactttcccaattgagtct |
7558211 |
T |
|
| Q |
353 |
taaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagcagagtagaaacaagactgcgatgacg |
452 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
7558210 |
taaattagctagccaaaaattataagacaataggaaactaaatatatcagcagccagattcaactagtttgagcagagtagaaacaagactgcgatgact |
7558111 |
T |
|
| Q |
453 |
gttgttgtccataaccagcaacattcatgacttgtgctaagaggccaacacaggaagttgatgattcaccaccatgatgtccat |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
7558110 |
gttgttgtccataaccagcaacattcatgacttgtgccaagagcccaacacaggaagttgatgattcaccaccatgaagtccat |
7558027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7558462 - 7558563
Alignment:
| Q |
1 |
tcaccatggaagggtagattgagtttattttccatctaaattgtaacccatggtagccacaatacttgactcaattacgagtatttaatatgccattaat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| || |||||| |
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|
| T |
7558462 |
tcaccatggcagggtagattgagtttactttccatataaattgtatcccatggtagccacaatacttggttcaattacgagtatttaatacgctattaat |
7558561 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
|
|| |
|
|
| T |
7558562 |
ac |
7558563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 22756523 - 22756615
Alignment:
| Q |
265 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaat |
357 |
Q |
| |
|
|||||||| ||||||| | | |||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||| |
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|
| T |
22756523 |
tgctacatggattgtatttatgaaattcaaattaagatatcagagaacttcttgttcaaaaaaagagagaactttctctatcgagtcgtaaat |
22756615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 22730169 - 22730078
Alignment:
| Q |
265 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaat |
357 |
Q |
| |
|
|||||||| ||||||| ||| |||| |||||||| |||| ||||||||||||| ||||||| ||||||||||||| |||| ||||| ||||| |
|
|
| T |
22730169 |
tgctacatggattgtatttgtgaaatccaaattaagatattagagaacttcttg-tcaaaaaaagagagaactttctctatcgagtcgtaaat |
22730078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 22730583 - 22730711
Alignment:
| Q |
54 |
tagccacaatacttgactcaattacgagtatttaatatgccattaatacattttaatagcatttttatgtcatttattaccattgaaaaccgtttttcat |
153 |
Q |
| |
|
|||| ||||||||||| ||||||| | || ||||||| || ||||||| |||||||||||||||||| | | |||||| ||||| ||||||| |||| |
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|
| T |
22730583 |
tagctacaatacttgattcaatta-gtgtctttaatacgcttttaatacgctttaatagcatttttatgccctctattacggttgaacaccgtttctcat |
22730681 |
T |
|
| Q |
154 |
aggaggtt--ctattataaaaagaaaattt |
181 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |
|
|
| T |
22730682 |
agcaggttcactattatgaaaagaaaattt |
22730711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22756440 - 22756397
Alignment:
| Q |
1 |
tcaccatggaagggtagattgagtttattttccatctaaattgt |
44 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
22756440 |
tcaccatggtagggtagattgagtttactttccatctaaattgt |
22756397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22730263 - 22730306
Alignment:
| Q |
1 |
tcaccatggaagggtagattgagtttattttccatctaaattgt |
44 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
22730263 |
tcaccatggcagtgtagattgagtttactttccatctaaattgt |
22730306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 65637 - 65585
Alignment:
| Q |
265 |
tgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttctt |
317 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
65637 |
tgctacatgaattgtatctctaaaatgcaaattaaaaaatcagagaatttctt |
65585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 23209210 - 23209173
Alignment:
| Q |
230 |
gtgtttcctttcctgaagcatttgttgaggttctctgc |
267 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
23209210 |
gtgtttccttccctgaagcctttgttgaggttctctgc |
23209173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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