View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_114 (Length: 209)
Name: NF12023_low_114
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_114 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 39126936 - 39126773
Alignment:
| Q |
15 |
cagagaccctgtcgttctttgataaattgtgtttgcggcttgttattgatttggagtggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaac |
114 |
Q |
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| T |
39126936 |
cagagaccctgtcgttctttgctaaattgtgtttgcggcttgttattgatttggggtggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaac |
39126837 |
T |
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| Q |
115 |
tcaaagctaaaacattcaccattgttgcttgggaatgggaatgtcctgtcaagtgtgctggcac |
178 |
Q |
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| T |
39126836 |
tcaaagctaaaacattcaccattgttgcttgggaatgggagtgtcctgtcaagtgtgctggcac |
39126773 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 34705155 - 34705210
Alignment:
| Q |
71 |
tggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaa |
126 |
Q |
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| T |
34705155 |
tggagagaaaatgcttgctgctgtgagtgaagttactaacaggctcaaagctaaaa |
34705210 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 11593227 - 11593295
Alignment:
| Q |
71 |
tggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaacattcaccattgt |
139 |
Q |
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| T |
11593227 |
tggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatcattgt |
11593295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 11644892 - 11644824
Alignment:
| Q |
71 |
tggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaacattcaccattgt |
139 |
Q |
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| T |
11644892 |
tggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatcattgt |
11644824 |
T |
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