View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_12 (Length: 545)
Name: NF12023_low_12
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 31097816 - 31098334
Alignment:
| Q |
19 |
taaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttttctctgcgatccaaataatgggccatattgttcgaaccataccatct |
118 |
Q |
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| T |
31097816 |
taaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttttctctgcgatccaaataatgggccatattgttggaaccatactatct |
31097915 |
T |
|
| Q |
119 |
caatcgtccacaattgtttgagatggcatctcccttaaccttgaatacatcgagtgattcagcattgattaactagtcattaatttctctctttcgtcca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31097916 |
caatcgtccacaattgtttgagatggcatctcccttaaccttgaatacatcaagtgattcagcattgattaactggtcattaatttctctctttcgtcca |
31098015 |
T |
|
| Q |
219 |
tgacataacagaagcaggaagtctatcatttgcctcatatgatattgctcgatctttatgagtcacaattgaatctcagtatgtgaacacatcaccttct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
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| T |
31098016 |
tgacataacagaagcaggaagtctatcatttgcctcatatgatattgctcgatctttgtgt-tcacaattgaatctcggtatgtgaacacatcaccttct |
31098114 |
T |
|
| Q |
319 |
catgttatgtccgtaaacaatcaacttcaactctgcacaaagggagaaaaatcaatcaccgattacttgttgttctcatttaaaagtcttgcggatgaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31098115 |
catgttatgtccgtaaacaatcaacttcaactctgcacaaagggagaaaaatcaatcaccgattacttgttgttctcatttagaagtcttgcggatgaac |
31098214 |
T |
|
| Q |
419 |
ttgttgttattgattgaacccttttagatgatgattttacccttcatattctgaatggtctttgcacttaaaatcgcggcacttcagactccattcgcac |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098215 |
ttgttgttattgattgaacccttttagatgatgattttacccttcatattatgaatggtctttgcacttaaaatcgcggcacttcagactccattcgcac |
31098314 |
T |
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| Q |
519 |
atgtcaacacccctttgctt |
538 |
Q |
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|||||||||||||||||||| |
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| T |
31098315 |
atgtcaacacccctttgctt |
31098334 |
T |
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