View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_13 (Length: 545)

Name: NF12023_low_13
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_13
NF12023_low_13
[»] chr8 (15 HSPs)
chr8 (13-244)||(11264440-11264671)
chr8 (175-252)||(33741503-33741580)
chr8 (209-251)||(30351595-30351637)
chr8 (197-244)||(4308820-4308867)
chr8 (305-380)||(41643198-41643273)
chr8 (197-251)||(37922980-37923034)
chr8 (197-242)||(6342266-6342311)
chr8 (175-256)||(7444277-7444358)
chr8 (204-237)||(17320012-17320045)
chr8 (195-244)||(20212438-20212487)
chr8 (133-202)||(31596398-31596467)
chr8 (195-240)||(40550426-40550471)
chr8 (207-251)||(6433548-6433592)
chr8 (207-251)||(25249402-25249446)
chr8 (193-241)||(35973923-35973971)
[»] chr3 (19 HSPs)
chr3 (197-518)||(33633893-33634213)
chr3 (195-244)||(4542402-4542451)
chr3 (128-244)||(27863974-27864091)
chr3 (195-251)||(34060815-34060871)
chr3 (197-244)||(271217-271264)
chr3 (195-244)||(18836-18885)
chr3 (195-244)||(18977-19026)
chr3 (195-251)||(10854863-10854919)
chr3 (204-244)||(39974864-39974904)
chr3 (195-251)||(41345979-41346035)
chr3 (150-234)||(44019114-44019198)
chr3 (208-243)||(21324528-21324563)
chr3 (164-202)||(39436528-39436566)
chr3 (207-240)||(8847513-8847546)
chr3 (160-225)||(31647334-31647399)
chr3 (195-244)||(34750306-34750355)
chr3 (207-252)||(37509114-37509159)
chr3 (195-251)||(11316970-11317026)
chr3 (195-251)||(46317490-46317546)
[»] scaffold0050 (1 HSPs)
scaffold0050 (167-250)||(37400-37483)
[»] chr7 (20 HSPs)
chr7 (195-256)||(3863041-3863102)
chr7 (195-251)||(6548534-6548590)
chr7 (195-255)||(14718167-14718227)
chr7 (198-256)||(3720166-3720224)
chr7 (195-252)||(32204185-32204242)
chr7 (305-361)||(2916206-2916262)
chr7 (195-251)||(29687480-29687536)
chr7 (199-242)||(35404307-35404350)
chr7 (195-237)||(34835882-34835924)
chr7 (195-241)||(40774291-40774337)
chr7 (195-252)||(42291283-42291341)
chr7 (195-241)||(43189686-43189732)
chr7 (198-240)||(46478607-46478649)
chr7 (195-240)||(1910259-1910304)
chr7 (207-252)||(40763252-40763297)
chr7 (195-244)||(44296950-44296999)
chr7 (195-251)||(16082481-16082537)
chr7 (207-251)||(18800209-18800253)
chr7 (207-251)||(24359769-24359813)
chr7 (207-251)||(27053554-27053598)
[»] chr5 (11 HSPs)
chr5 (195-255)||(17605961-17606021)
chr5 (209-255)||(6823816-6823862)
chr5 (160-226)||(37307643-37307709)
chr5 (195-247)||(678458-678510)
chr5 (160-235)||(8987432-8987506)
chr5 (167-244)||(10979837-10979915)
chr5 (198-243)||(3015102-3015147)
chr5 (204-244)||(19894829-19894869)
chr5 (195-254)||(3242002-3242061)
chr5 (195-256)||(17168675-17168736)
chr5 (204-244)||(39335484-39335524)
[»] chr4 (21 HSPs)
chr4 (197-244)||(13966570-13966617)
chr4 (203-250)||(30617954-30618001)
chr4 (195-251)||(35675239-35675295)
chr4 (195-251)||(35927323-35927379)
chr4 (195-251)||(52341605-52341661)
chr4 (197-244)||(966593-966640)
chr4 (197-242)||(32584570-32584615)
chr4 (207-251)||(9693532-9693576)
chr4 (195-227)||(41840438-41840470)
chr4 (195-241)||(44478715-44478761)
chr4 (197-242)||(52021045-52021090)
chr4 (207-251)||(1457596-1457640)
chr4 (207-251)||(19328989-19329033)
chr4 (195-251)||(20456573-20456629)
chr4 (207-251)||(31754942-31754986)
chr4 (207-251)||(34316784-34316828)
chr4 (195-251)||(35808445-35808501)
chr4 (195-251)||(41956262-41956318)
chr4 (128-192)||(42627071-42627135)
chr4 (305-361)||(43159519-43159575)
chr4 (207-251)||(50514674-50514718)
[»] chr2 (9 HSPs)
chr2 (197-244)||(2239593-2239640)
chr2 (195-240)||(33726395-33726440)
chr2 (195-240)||(13997953-13997998)
chr2 (197-242)||(30831631-30831676)
chr2 (195-252)||(33864358-33864415)
chr2 (195-240)||(34220695-34220740)
chr2 (195-251)||(6999206-6999262)
chr2 (136-208)||(11659319-11659391)
chr2 (304-368)||(37886053-37886117)
[»] chr1 (14 HSPs)
chr1 (136-251)||(21631210-21631324)
chr1 (207-253)||(40920187-40920233)
chr1 (195-242)||(6519292-6519339)
chr1 (204-241)||(41898914-41898951)
chr1 (192-241)||(46296228-46296277)
chr1 (189-241)||(27160133-27160185)
chr1 (204-242)||(17402961-17402999)
chr1 (197-251)||(41147526-41147580)
chr1 (192-241)||(49559730-49559779)
chr1 (205-241)||(10161022-10161058)
chr1 (207-251)||(27209779-27209823)
chr1 (197-241)||(34644179-34644223)
chr1 (195-251)||(42607370-42607426)
chr1 (204-244)||(51424168-51424208)
[»] scaffold0101 (1 HSPs)
scaffold0101 (195-251)||(11096-11152)
[»] chr6 (6 HSPs)
chr6 (195-247)||(27127556-27127608)
chr6 (195-251)||(28014639-28014695)
chr6 (204-251)||(21186075-21186122)
chr6 (205-241)||(5029511-5029547)
chr6 (305-357)||(10385341-10385393)
chr6 (207-251)||(16437643-16437687)
[»] scaffold0062 (3 HSPs)
scaffold0062 (195-251)||(16820-16876)
scaffold0062 (195-251)||(26988-27044)
scaffold0062 (195-251)||(37154-37210)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 11264671 - 11264440
Alignment:
Q  13 tggacatcagttaaaaaagtaaatatgtaaaattatcttgaaagatgcttaatcgaactcataaaagtataaaaacgtgttctcataaatgtaaaatttt 112  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11264671 tggacattagttaaagaagtaaatatgtaaaattatcttgaaagatgcttaatcgaactcataaaagtataaaaacgtgttctcataaatgtaaaatttt 11264572  T
Q  113 cnnnnnnngaataatttttaggaaaatgctaaagagtatccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaataatgaattta 212  Q
    |       ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11264571 ctttttttgaataatttttagaaaaatgttaaagagtacccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaataatgaattta 11264472  T
Q  213 actttttaaaagttgaaatattgttgaatcca 244  Q
    |||||||||||||||| |||||||||||||||    
T  11264471 actttttaaaagttgatatattgttgaatcca 11264440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 33741503 - 33741580
Alignment:
Q  175 taaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaat 252  Q
    |||||||| || ||| |||||||||||| || |||||||||||||||||||| ||||||||||||| ||| |||||||    
T  33741503 taaaaataaaaatatagtattgaaaaatgataaatttaactttttaaaagttaaaatattgttgaaaccaatgcaaat 33741580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 30351637 - 30351595
Alignment:
Q  209 tttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  30351637 tttaactttttaaaagttaaaatattgttgaatccaatgcaaa 30351595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 4308867 - 4308820
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| |||||||||||||| |||||||| ||||| |||||||||||    
T  4308867 aaaaatgatgaatttaactttataaaagttaaaatagtgttgaatcca 4308820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 41643273 - 41643198
Alignment:
Q  305 ttaaatatatgaaaaatagttcaagcatgacttttatttacggacaaatagacattttcatatgggcaacgcataa 380  Q
    ||||||||||||  ||||||| || |||||||||||  |||  ||||| |||||||| ||||||||||| ||||||    
T  41643273 ttaaatatatgagcaatagtttaaacatgacttttacctacatacaaagagacatttacatatgggcaatgcataa 41643198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 37922980 - 37923034
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||| ||||||||||||||||||| ||||  ||||||| ||||||||| ||||||    
T  37922980 aaaagtaatgaatttaactttttagaagtcaaaatattattgaatccaatgcaaa 37923034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 6342311 - 6342266
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    |||| |||||||||||| |||||||||||| ||||||| |||||||    
T  6342311 aaaactaatgaatttaattttttaaaagttaaaatattattgaatc 6342266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 7444358 - 7444277
Alignment:
Q  175 taaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatctac 256  Q
    |||||||| || ||||| |||||||| |  ||||||| |  ||||||||||| ||||||||||||||| | |||||| ||||    
T  7444358 taaaaataaaaatattgcattgaaaagtggtgaatttgatgttttaaaagttaaaatattgttgaatctaatgcaaacctac 7444277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 17320012 - 17320045
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgtt 237  Q
    ||||||||||||||||||||||| ||||||||||    
T  17320012 atgaatttaactttttaaaagttaaaatattgtt 17320045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 20212438 - 20212487
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| | |||||||||| |||||||||||| |||||| ||||||||||    
T  20212438 tgaaaagtgatgaatttaagtttttaaaagttaaaatatcgttgaatcca 20212487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 31596398 - 31596467
Alignment:
Q  133 ggaaaatgctaaagagtatccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaat 202  Q
    ||||||||||||||||| || ||||  |||||| ||||| | ||||||||||| |||||| || ||||||    
T  31596398 ggaaaatgctaaagagtgtcattgggacattgattaagatgataaaaatagaaatattgtgttaaaaaat 31596467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 40550426 - 40550471
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaa 240  Q
    ||||||||| ||||||||| |||||||||| | |||||||||||||    
T  40550426 tgaaaaatagtgaatttaaatttttaaaagataaaatattgttgaa 40550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 6433592 - 6433548
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||| |||||||||| || ||| ||||||    
T  6433592 aatttaactttttaaaagttaaaatattgttaaaaccaatgcaaa 6433548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 25249402 - 25249446
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  25249402 aatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 25249446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 35973923 - 35973971
Alignment:
Q  193 attgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||||||| || ||||||| |||||||||| | ||||||||||||||    
T  35973923 attgaaaaatgataaatttaattttttaaaagataaaatattgttgaat 35973971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 197 - 518
Target Start/End: Original strand, 33633893 - 33634213
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatctacnnnnnnnnnattttcttaacaggtgtcctgcacttgttag 296  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||| ||||||    
T  33633893 aaaaataatgaatttaactcttttaaagttgaaatattgttgaatccattgcaaatctactattttttg-ttttcttaacagatgtcctgcacctgttag 33633991  T
Q  297 cataacccttaaatatatgaaaaatagttcaagcatgacttttatttacggacaaatagacattttcatatgggcaacgcataaatgagtatttagtgac 396  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  33633992 cataacccttaaatatatgacaaatagttcaagcatgaattttatttacgaacaaatagacattttcataggggcaacacataaatgagtatttagtgac 33634091  T
Q  397 gaattttgtctctaagtaaannnnnnnnnnnnnnnnncaaatattgagacccctcttagtttgaggccttgtaccaaggaccttgttgcacttggtcaag 496  Q
    ||||||||||| ||||||||                 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33634092 gaattttgtctataagtaaaatttatattttttttttcaaattttgagacccctcttagtttgaggccttgtaccaaggaccttgttgcacttggtcaag 33634191  T
Q  497 gtcgaaactgtatttagtgtca 518  Q
    ||||||||| |||| |||||||    
T  33634192 gtcgaaactatattcagtgtca 33634213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 4542402 - 4542451
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  4542402 tgaaaaatgatgaatttgactttttaaaagtttaaatattgttgaatcca 4542451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 27863974 - 27864091
Alignment:
Q  128 ttttaggaaaatgctaaagagtatccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaataatgaatttaacttttta-aaagtt 226  Q
    ||||||| ||||||||||||||  ||||    |||||  ||||||| |||||| |||| ||||| |||| ||||| |||||||||| |||||  ||||||    
T  27863974 ttttagggaaatgctaaagagtgcccttaaggcattggttaagaggataaaaaaagaaatattgcattggaaaatgatgaatttaatttttttcaaagtt 27864073  T
Q  227 gaaatattgttgaatcca 244  Q
     |||||||||||||||||    
T  27864074 aaaatattgttgaatcca 27864091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 34060815 - 34060871
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||| || ||||||    
T  34060815 tgaaaagtgatgaatttaactttttaaaagttaaaatattgttgaattcaatgcaaa 34060871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 271217 - 271264
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  271217 aaaaataatgaatttgactttttaaaagttaaaacattgttgaatcca 271264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 18836 - 18885
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| | |||||||||||||||||||| || |||||||||||||||||    
T  18836 tgaaaagtgatgaatttaactttttaaaaattaaaatattgttgaatcca 18885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 18977 - 19026
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| | |||||||||||||||||||| || |||||||||||||||||    
T  18977 tgaaaagtgatgaatttaactttttaaaaattaaaatattgttgaatcca 19026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 10854919 - 10854863
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| |||| |||||||||||||||||||| |||| |||||||| ||| ||||||    
T  10854919 tgaaaactaataaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaa 10854863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 39974864 - 39974904
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  39974864 atgaatttaactttttaaaagttaaaatagtgttgaatcca 39974904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 41346035 - 41345979
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| |||| ||||||| |||||||||||| ||||||||||||| ||| ||||||    
T  41346035 tgaaaagtaataaatttaattttttaaaagttaaaatattgttgaaaccaatgcaaa 41345979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 44019114 - 44019198
Alignment:
Q  150 atccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatatt 234  Q
    ||||||||| |||||| |||| || |||||||| || |||   ||| ||||||  |||||||||||||||||||||| |||||||    
T  44019114 atccttggagcattgaataaggggataaaaatataaatatatcattaaaaaatggtgaatttaactttttaaaagttaaaatatt 44019198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 21324563 - 21324528
Alignment:
Q  208 atttaactttttaaaagttgaaatattgttgaatcc 243  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21324563 atttaactttttaaaagttaaaatattgttgaatcc 21324528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 39436566 - 39436528
Alignment:
Q  164 gactaagagggtaaaaatagaattattgtattgaaaaat 202  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  39436566 gactaagaggataaaaatagaaatattgtattgaaaaat 39436528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 8847513 - 8847546
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaa 240  Q
    |||||||||||||||||||| |||||||||||||    
T  8847513 aatttaactttttaaaagttaaaatattgttgaa 8847546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 31647399 - 31647334
Alignment:
Q  160 cattgactaagagggtaaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagt 225  Q
    |||||| |||| || |||||||| || ||| | |||||||||| || |||||||||||||||||||    
T  31647399 cattgaataaggggataaaaatataaatatagcattgaaaaatgataaatttaactttttaaaagt 31647334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 34750306 - 34750355
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| | ||||||||||||||||| || || |||||||||||||||||    
T  34750306 tgaaaagtgatgaatttaactttttataaattaaaatattgttgaatcca 34750355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 37509159 - 37509114
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaat 252  Q
    |||||||||||||||||||  ||||||||||||| ||| |||||||    
T  37509159 aatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaat 37509114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 11317026 - 11316970
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| | ||||||||||||||||||||||  ||||||| ||||||| | ||||||    
T  11317026 tgaaaagttatgaatttaactttttaaaagtcaaaatattattgaatctaatgcaaa 11316970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 46317546 - 46317490
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  46317546 tgaaaaatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaa 46317490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 37400 - 37483
Alignment:
Q  167 taagagggtaaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaa 250  Q
    ||||||| | ||||||||| |||||||||||||||| ||||||||||||||| ||||||  |||| || ||||||||| |||||    
T  37400 taagaggattaaaatagaaatattgtattgaaaaatgatgaatttaacttttcaaaagtcaaaatgttattgaatccaatgcaa 37483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 3863102 - 3863041
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatctac 256  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||||||| |||||||||||    
T  3863102 tgaaaaatagtgaatttaacttttttaaagttaaaaaattgttgaatccaatgcaaatctac 3863041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 6548590 - 6548534
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  6548590 tgaaaaatgatgaatttaactttttaaaagttaaaatattgttggatccaatgcaaa 6548534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 14718167 - 14718227
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatcta 255  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| || | ||||||||    
T  14718167 tgaaaaataatgaatttaactttttaaaagttaaaatattattgaattcaatacaaatcta 14718227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 3720166 - 3720224
Alignment:
Q  198 aaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatctac 256  Q
    ||||| || |||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  3720166 aaaatgataaatttaactttttaaaagttaaaacattcttgaatccattacaaatctac 3720224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 32204242 - 32204185
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaat 252  Q
    |||||| | ||||||||||||||||||||||| ||||||| |||||| || |||||||    
T  32204242 tgaaaagtgatgaatttaactttttaaaagttaaaatatttttgaatacaatgcaaat 32204185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 2916206 - 2916262
Alignment:
Q  305 ttaaatatatgaaaaatagttcaagcatgacttttatttacggacaaatagacattt 361  Q
    |||||||||||| || | |||||| |||||||||||| ||| |||||||||||||||    
T  2916206 ttaaatatatgagaattggttcaaacatgacttttatctacagacaaatagacattt 2916262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 29687536 - 29687480
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| | ||||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  29687536 tgaaaagtgatgaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaa 29687480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 35404307 - 35404350
Alignment:
Q  199 aaataatgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||    
T  35404307 aaatgatgaatttaactttttaaaagttaaaatatcgttgaatc 35404350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 34835924 - 34835882
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgtt 237  Q
    |||||||| | ||||||||||||||||||||| ||||||||||    
T  34835924 tgaaaaatgaagaatttaactttttaaaagttaaaatattgtt 34835882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 40774291 - 40774337
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||| | ||||||||||||||||||||||| |||||||| |||||    
T  40774291 tgaaaattgatgaatttaactttttaaaagttaaaatattgatgaat 40774337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 42291341 - 42291283
Alignment:
Q  195 tgaaaaataatgaatttaacttttt-aaaagttgaaatattgttgaatccattgcaaat 252  Q
    ||||||||||| ||||| | ||||| ||||||| ||||||||||||||||| |||||||    
T  42291341 tgaaaaataataaattttatttttttaaaagttaaaatattgttgaatccaatgcaaat 42291283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 43189686 - 43189732
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||| | |||||||| |||||||||||||| ||||||||||||||    
T  43189686 tgaaaagtgatgaatttgactttttaaaagttaaaatattgttgaat 43189732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 46478607 - 46478649
Alignment:
Q  198 aaaataatgaatttaactttttaaaagttgaaatattgttgaa 240  Q
    ||||| || |||||||||||||||||||| |||||||||||||    
T  46478607 aaaatgataaatttaactttttaaaagttaaaatattgttgaa 46478649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 1910304 - 1910259
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaa 240  Q
    |||||||| || |||||||||||||||||||| |||| ||||||||    
T  1910304 tgaaaaatgataaatttaactttttaaaagttaaaatgttgttgaa 1910259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 40763297 - 40763252
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaat 252  Q
    |||||||||||||||||||| |||| |||||||| ||| |||||||    
T  40763297 aatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaat 40763252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 44296950 - 44296999
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| | |||||||||| |||||||||||| |||||| ||||||||||    
T  44296950 tgaaaagtgatgaatttaagtttttaaaagttaaaatatcgttgaatcca 44296999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 16082481 - 16082537
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| | ||||||||||| ||||||||||| |  |||||||||||||| ||||||    
T  16082481 tgaaaattgatgaatttaacgttttaaaagttaagttattgttgaatccaatgcaaa 16082537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 18800209 - 18800253
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    ||||||||||||||||| ||  |||||||||||||||||| ||||    
T  18800209 aatttaactttttaaaaattacaatattgttgaatccattacaaa 18800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 24359769 - 24359813
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||| |||| |||||||| ||| ||||||    
T  24359769 aatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaa 24359813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 27053554 - 27053598
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  27053554 aatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 27053598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 17606021 - 17605961
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatcta 255  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| || | ||||||||    
T  17606021 tgaaaaataatgaatttaactttttaaaagttaaaatattattgaattcaatacaaatcta 17605961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 6823816 - 6823862
Alignment:
Q  209 tttaactttttaaaagttgaaatattgttgaatccattgcaaatcta 255  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  6823816 tttaactttttaaaagttaaaatattgttgaatccaatgcaaatcta 6823862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 37307709 - 37307643
Alignment:
Q  160 cattgactaagagggtaaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagtt 226  Q
    |||||| ||||||| |||||||| || ||||| |||||||||| ||||||||| |||||||||||||    
T  37307709 cattgattaagaggataaaaataaaactattgcattgaaaaatgatgaatttacctttttaaaagtt 37307643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 678510 - 678458
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattg 247  Q
    |||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  678510 tgaaaagtaatgaatttaaccttttaaaagttaaaaaattgttgaatccattg 678458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 8987506 - 8987432
Alignment:
Q  160 cattgactaagagggtaaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatattg 235  Q
    |||||| ||||||| |||||||| || ||||| ||| |||||| ||||||||||| ||||||||||| ||||||||    
T  8987506 cattgattaagaggataaaaatataaatattgcatt-aaaaatgatgaatttaacgttttaaaagttaaaatattg 8987432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 10979915 - 10979837
Alignment:
Q  167 taagagggtaaaaat-agaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||| |||| |||| |||| |||||| ||||||||||  |||||||| || ||||||| |||||||||    
T  10979915 taagagggtaaaaataagaaatattttattaaaaaatgatgaatttaaaattttaaaaattaaaatattattgaatcca 10979837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 3015102 - 3015147
Alignment:
Q  198 aaaataatgaatttaactttttaaaagttgaaatattgttgaatcc 243  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||    
T  3015102 aaaatgattaatttaactttttaaaagttaaaatattgttgaatcc 3015147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 19894869 - 19894829
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  19894869 atgaatttaactttttaaaagttaaaatattgttaaatcca 19894829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 3242002 - 3242061
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatct 254  Q
    |||||| | ||||||| ||||||||||||||| |||||||||||||| || || ||||||    
T  3242002 tgaaaattgatgaattaaactttttaaaagttaaaatattgttgaattcaatgaaaatct 3242061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 17168736 - 17168675
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaatctac 256  Q
    |||||||| |||||||| ||||||||||| || |||||||| ||||| | ||||||| ||||    
T  17168736 tgaaaaatgatgaatttgactttttaaaatttaaaatattgctgaattccttgcaaacctac 17168675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 39335524 - 39335484
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||||||||||  |||| ||||||||||||    
T  39335524 atgaatttaactttttaaaagtcaaaatgttgttgaatcca 39335484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 13966617 - 13966570
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13966617 aaaaataatgaatttgactttttaaaagttgacatattgttgaatcca 13966570  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 30618001 - 30617954
Alignment:
Q  203 aatgaatttaactttttaaaagttgaaatattgttgaatccattgcaa 250  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  30618001 aatgaatttaactttttaaaagttcaaatattgttgaatccaatgcaa 30617954  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 35675239 - 35675295
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||| || ||||||    
T  35675239 tgaaaagtgatgaatttaactttttaaaagttaaaatattgttgaattcaatgcaaa 35675295  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 35927323 - 35927379
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  35927323 tgaaaaacgatgaatttaactttttaaaagttaaaatattgttgaatctaatgcaaa 35927379  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 52341661 - 52341605
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| ||||||||||||||||||||||  |||| |||||||||||| ||||||    
T  52341661 tgaaaaatgatgaatttaactttttaaaagtcaaaatgttgttgaatccaatgcaaa 52341605  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 966640 - 966593
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||    
T  966640 aaaaattatgaatttaactttttaaaaattaaaatattgttgaatcca 966593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 32584570 - 32584615
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  32584570 aaaagtaatgaattcaactttttaaaagttaaaatattgttgaatc 32584615  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 9693532 - 9693576
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||    
T  9693532 aatttaactttttaaaagtcgaaatattgttgaaaccaatgcaaa 9693576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 41840438 - 41840470
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttg 227  Q
    |||||||||||||||||||||||||||||||||    
T  41840438 tgaaaaataatgaatttaactttttaaaagttg 41840470  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 44478761 - 44478715
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||||||||| ||||||||||||||||||  ||| ||||||||||    
T  44478761 tgaaaaataatggatttaactttttaaaagtaaaaaaattgttgaat 44478715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 52021090 - 52021045
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    |||||| || |||||||||||||||| ||| |||||||||||||||    
T  52021090 aaaaatgataaatttaactttttaaatgttaaaatattgttgaatc 52021045  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 1457596 - 1457640
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    ||||||| |||||||||||| |||||||||||||| || ||||||    
T  1457596 aatttaattttttaaaagttaaaatattgttgaattcaatgcaaa 1457640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 19328989 - 19329033
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  19328989 aatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 19329033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 20456629 - 20456573
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| | |||||||||| |||||||| ||| |||||||||||||| || ||||||    
T  20456629 tgaaaagttatgaatttaaatttttaaatgttaaaatattgttgaattcaatgcaaa 20456573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 31754986 - 31754942
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  31754986 aatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 31754942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 34316784 - 34316828
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  34316784 aatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 34316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 35808445 - 35808501
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  35808445 tgaaaaatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaa 35808501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 41956262 - 41956318
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  41956262 tgaaaaatgataaatttaactttttaaaagtcaaaatgttgttgaagccaatgcaaa 41956318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 42627071 - 42627135
Alignment:
Q  128 ttttaggaaaatgctaaagagtatccttggaccattgactaagagggtaaaaatagaattattgt 192  Q
    ||||||||||||||| ||||||||| | | | |||||| ||||| | ||||||||||| ||||||    
T  42627071 ttttaggaaaatgctgaagagtatcttcgaaacattgattaagatgataaaaatagaaatattgt 42627135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 43159575 - 43159519
Alignment:
Q  305 ttaaatatatgaaaaatagttcaagcatgacttttatttacggacaaatagacattt 361  Q
    |||||||||| |  |||||||||| ||||||||||| ||||||| ||||| ||||||    
T  43159575 ttaaatatataagtaatagttcaaacatgacttttacttacggataaataaacattt 43159519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 50514674 - 50514718
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||| |||| |||||||| ||| ||||||    
T  50514674 aatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaa 50514718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 2239640 - 2239593
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  2239640 aaaaatgatgaatttaactttttaaaagttaaaatattgttgaatcca 2239593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 33726440 - 33726395
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaa 240  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  33726440 tgaaaaataataaatttaactttctaaaagttaaaatattgttgaa 33726395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 13997953 - 13997998
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaa 240  Q
    |||||||| || ||||||||||||||||| || |||||||||||||    
T  13997953 tgaaaaatgataaatttaactttttaaaaattaaaatattgttgaa 13997998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 30831676 - 30831631
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    |||||| ||||||||||||||||||||||  |||||||||| ||||    
T  30831676 aaaaatgatgaatttaactttttaaaagtaaaaatattgttaaatc 30831631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 33864415 - 33864358
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaat 252  Q
    |||||| |||| |||||||| ||||||||||  ||||||||||||| ||| |||||||    
T  33864415 tgaaaagtaataaatttaacattttaaaagtcaaaatattgttgaaaccaatgcaaat 33864358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 34220695 - 34220740
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaa 240  Q
    |||||| | |||||||||| |||||||||||| |||||||||||||    
T  34220695 tgaaaagtgatgaatttaagtttttaaaagttaaaatattgttgaa 34220740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 6999262 - 6999206
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  6999262 tgaaaaatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaa 6999206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 11659391 - 11659319
Alignment:
Q  136 aaatgctaaagagtatccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaataatgaa 208  Q
    ||||| ||||||||  ||||||| ||||   ||||||| |||||||| || ||||||||||||||||| ||||    
T  11659391 aaatgttaaagagtgcccttggagcattcgttaagaggataaaaataaaaatattgtattgaaaaatagtgaa 11659319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 37886053 - 37886117
Alignment:
Q  304 cttaaatatatgaaaaatagttcaagcatgacttttatttacggacaaatagacattttcatatg 368  Q
    |||||||||||||||||| ||| || |||||||||||  ||  |||||||||| |||| ||||||    
T  37886053 cttaaatatatgaaaaatggtttaaacatgacttttacctatagacaaatagatatttacatatg 37886117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 21631210 - 21631324
Alignment:
Q  136 aaatgctaaagagtatccttggaccattgactaagagggtaaaaatagaattattgtattgaaaaataatgaatttaactttttaaaagttgaaatattg 235  Q
    |||||||||||||| || ||||  |||||  ||||| | ||||||||||| ||||||| | |||||| | ||||||||| ||||||||||  | ||||||    
T  21631210 aaatgctaaagagtgtctttgggacattggttaagatgataaaaatagaaatattgtaataaaaaatgaagaatttaac-ttttaaaagtcaagatattg 21631308  T
Q  236 ttgaatccattgcaaa 251  Q
    ||||||||| ||||||    
T  21631309 ttgaatccaatgcaaa 21631324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 40920233 - 40920187
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaatc 253  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  40920233 aatttaactttttaaaagttaaaatattgttgaatccaatgcaaatc 40920187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 6519339 - 6519292
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||    
T  6519339 tgaaaaataatgaatttaacttttaaaaaattcaaatattgttgaatc 6519292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 41898914 - 41898951
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  41898914 atgaatttaactttttaaaagttaaaatattgttgaat 41898951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 46296228 - 46296277
Alignment:
Q  192 tattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  46296228 tattaaaaaataataaatttaactttttaaaagtcaaaatattgttgaat 46296277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 27160133 - 27160185
Alignment:
Q  189 ttgtattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||||||||||| |||||||| |||||| ||||||| |||||| |||||||    
T  27160133 ttgtattgaaaaatgatgaatttgacttttcaaaagttaaaatatagttgaat 27160185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 17402999 - 17402961
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaatc 242  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  17402999 atgaatttaactttttaaaagtcaaaatattgttgaatc 17402961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 41147526 - 41147580
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||| || |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  41147526 aaaaatgattaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 41147580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 49559730 - 49559779
Alignment:
Q  192 tattgaaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||||| ||| | |||||||||| ||||||||| ||||||||||||||    
T  49559730 tattgaaagatagtaaatttaacttcttaaaagttaaaatattgttgaat 49559779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 10161022 - 10161058
Alignment:
Q  205 tgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||||||||||||||||||| |||||| |||||||    
T  10161022 tgaatttaactttttaaaagttaaaatatcgttgaat 10161058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 27209779 - 27209823
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||| |||| |||||||| ||| ||||||    
T  27209779 aatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaa 27209823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 34644223 - 34644179
Alignment:
Q  197 aaaaataatgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||| |||||||| ||| |||||||||| ||||||||||||||    
T  34644223 aaaaatgatgaatttgactatttaaaagttaaaatattgttgaat 34644179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 42607370 - 42607426
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || |||||||||||||||||||  |||| |||||||| ||| ||||||    
T  42607370 tgaaaaatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaa 42607426  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 51424208 - 51424168
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaatcca 244  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  51424208 atgaatttaactttttaaaggttaaaacattgttgaatcca 51424168  T

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Target: scaffold0101 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 11096 - 11152
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||  ||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  11096 tgaaaaaagatgaatttaactttttaaaagttaaaatattgttaaattcattgcaaa 11152  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 27127556 - 27127608
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattg 247  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||||||||    
T  27127556 tgaaaaatgatgaatttaactttttaaaagtcaagatattgttgaatccattg 27127608  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 28014695 - 28014639
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||    
T  28014695 tgaaaaatgatgagtttgactttttaaaagttaaaatattgttgaatccaatgcaaa 28014639  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 21186075 - 21186122
Alignment:
Q  204 atgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    ||||||||||||||||||||||| ||||||| ||||||| | ||||||    
T  21186075 atgaatttaactttttaaaagttaaaatattattgaatctaatgcaaa 21186122  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 5029511 - 5029547
Alignment:
Q  205 tgaatttaactttttaaaagttgaaatattgttgaat 241  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  5029511 tgaatttaactttttaaaagttaaaatagtgttgaat 5029547  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 10385341 - 10385393
Alignment:
Q  305 ttaaatatatgaaaaatagttcaagcatgacttttatttacggacaaatagac 357  Q
    |||||||||| || ||| |||||| |||||||||||  |||||||||||||||    
T  10385341 ttaaatatataaataatggttcaaacatgacttttacctacggacaaatagac 10385393  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 16437643 - 16437687
Alignment:
Q  207 aatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||    
T  16437643 aatttaactttttaaaagtaaaaatattgttgaaaccaatgcaaa 16437687  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 16820 - 16876
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || ||| |||||||||||||||  ||||||||||||| ||| ||||||    
T  16820 tgaaaaatgataaatgtaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 16876  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 26988 - 27044
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || ||| |||||||||||||||  ||||||||||||| ||| ||||||    
T  26988 tgaaaaatgataaatgtaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 27044  T

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Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 37154 - 37210
Alignment:
Q  195 tgaaaaataatgaatttaactttttaaaagttgaaatattgttgaatccattgcaaa 251  Q
    |||||||| || ||| |||||||||||||||  ||||||||||||| ||| ||||||    
T  37154 tgaaaaatgataaatgtaactttttaaaagtcaaaatattgttgaaaccaatgcaaa 37210  T

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