View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_14 (Length: 517)

Name: NF12023_low_14
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_14
NF12023_low_14
[»] chr6 (2 HSPs)
chr6 (1-502)||(21005470-21005971)
chr6 (72-126)||(21005990-21006044)
[»] scaffold0014 (1 HSPs)
scaffold0014 (437-502)||(66796-66861)
[»] scaffold0557 (5 HSPs)
scaffold0557 (69-131)||(5969-6031)
scaffold0557 (72-131)||(5885-5944)
scaffold0557 (165-205)||(5969-6009)
scaffold0557 (69-131)||(5021-5083)
scaffold0557 (72-132)||(5107-5167)
[»] scaffold0442 (4 HSPs)
scaffold0442 (69-131)||(9363-9425)
scaffold0442 (72-131)||(9279-9338)
scaffold0442 (69-131)||(8386-8448)
scaffold0442 (165-205)||(9363-9403)
[»] scaffold0115 (3 HSPs)
scaffold0115 (165-205)||(46896-46936)
scaffold0115 (72-131)||(46961-47020)
scaffold0115 (69-109)||(46896-46936)
[»] chr1 (1 HSPs)
chr1 (28-131)||(41336427-41336527)


Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 21005971 - 21005470
Alignment:
Q  1 catagtactcgtgttgttcttctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatgg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005971 catagtactcatgttgttcttctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatgg 21005872  T
Q  101 tagatttgaggctgcatgttttgattcacactactaggagttgaaaccatagcaatcatgacggtgttgttcttctcctgttgaacacttgcaggataga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  21005871 tagatttgaggctgcatgttttgattcacactactaggagttgaaaccatagcaatcatgacggtgttattcttctcctgttgaacacttgcagggtaga 21005772  T
Q  201 tttgaggcttaaagttttggataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005771 tttgaggcttaaagttttggataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttga 21005672  T
Q  301 tcaacatgtattgaatagacctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttagatttgaaggttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005671 tcaacatgtattgaatagacctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttagatttgaaggttt 21005572  T
Q  401 tgtaatctcactattagtgtttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005571 tgtaatctcactattagtgtttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctg 21005472  T
Q  501 tg 502  Q
    ||    
T  21005471 tg 21005470  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 21006044 - 21005990
Alignment:
Q  72 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgatt 126  Q
    ||||||||||||||||||||||| || | ||||||||| ||||||||||||||||    
T  21006044 tgttcttgttttgttgaacactttcaggatagatttgacgctgcatgttttgatt 21005990  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 66861 - 66796
Alignment:
Q  437 catggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg 502  Q
    ||||||||||||||||| | |||||||||| |||| |||||| ||| |||||||||||||||||||    
T  66861 catggggataacttcatcggaagaattcacattaaatacgatttataatttgttgtgttatctgtg 66796  T

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Target: scaffold0557 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 5969 - 6031
Alignment:
Q  69 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    |||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  5969 tgttgttcttctcctgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 5885 - 5944
Alignment:
Q  72 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  5885 tgttcttgttttgttgaacacttccagggtagatttgacgttgcatgctttgattaacac 5944  T

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Target: scaffold0557; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 5969 - 6009
Alignment:
Q  165 tgttgttcttctcctgttgaacacttgcaggatagatttga 205  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5969 tgttgttcttctcctgttgaacacttgcatggtagatttga 6009  T

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Target: scaffold0557; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 5083 - 5021
Alignment:
Q  69 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    |||||||||| |  |||||||||||| ||| |||||||||| | |||||||||||||| ||||    
T  5083 tgttgttcttctcatgttgaacactttcattgtagatttgatggtgcatgttttgattaacac 5021  T

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Target: scaffold0557; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 5167 - 5107
Alignment:
Q  72 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacact 132  Q
    |||||||||||||||||||||||  | ||||||||||| ||| |||| ||| ||| |||||    
T  5167 tgttcttgttttgttgaacacttctagggtagatttgacgctacatgctttaattaacact 5107  T

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Target: scaffold0442 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 9363 - 9425
Alignment:
Q  69 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    |||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  9363 tgttgttcttctactgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac 9425  T

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Target: scaffold0442; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 9279 - 9338
Alignment:
Q  72 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  9279 tgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacac 9338  T

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Target: scaffold0442; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 8448 - 8386
Alignment:
Q  69 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    |||||||||| |  ||||||||||||  ||||||||||||| | |||||||||||||| ||||    
T  8448 tgttgttcttctcatgttgaacacttttatggtagatttgatggtgcatgttttgattaacac 8386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 9363 - 9403
Alignment:
Q  165 tgttgttcttctcctgttgaacacttgcaggatagatttga 205  Q
    |||||||||||| |||||||||||||||| | |||||||||    
T  9363 tgttgttcttctactgttgaacacttgcatggtagatttga 9403  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
Q  165 tgttgttcttctcctgttgaacacttgcaggatagatttga 205  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  46936 tgttgttcttctcctgttgaacacttgcatggtagatttga 46896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 47020 - 46961
Alignment:
Q  72 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 131  Q
    ||||||||| ||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  47020 tgttcttgtattgttgaacacttccagggtagatttgacgttgcatgctttgattaacac 46961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
Q  69 tgttgttcttgttttgttgaacacttgcatggtagatttga 109  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  46936 tgttgttcttctcctgttgaacacttgcatggtagatttga 46896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 41336527 - 41336427
Alignment:
Q  28 ttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattc 127  Q
    ||||| ||||||||||  ||||| ||| |||||| ||| ||||||   |||||| |||||||||||| ||  |||||||||| | |||||| |||||||     
T  41336527 ttgattaacaccaggagttggaaccatagtactcatgatggtgtt---cttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattg 41336431  T
Q  128 acac 131  Q
    ||||    
T  41336430 acac 41336427  T

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