View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_16 (Length: 516)
Name: NF12023_low_16
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 201 - 504
Target Start/End: Original strand, 1161220 - 1161523
Alignment:
| Q |
201 |
gcttttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaagatgcatgtaa |
300 |
Q |
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| T |
1161220 |
gcttttgtctattttttgagcgtacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaagatgcatgtaa |
1161319 |
T |
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| Q |
301 |
gctgaatgatgcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgttgtacatcgatttgttcagtatccttttca |
400 |
Q |
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| T |
1161320 |
gctgaatgatgcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgttgtacatcgatttgttcagtatccttttca |
1161419 |
T |
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| Q |
401 |
ttattttaacagcaagacctgcaggtcatactattattagtcttgtgattcttctctttgcagaacttaaaatggttagtgtagcaagcaactgtttgat |
500 |
Q |
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| T |
1161420 |
ttattttaacagcaagacctacaggtcatactattattagtcttgtgattcttctctttgcagaacttaaaatggtaagtgtagcaagcaactgttcgat |
1161519 |
T |
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| Q |
501 |
gtcc |
504 |
Q |
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| T |
1161520 |
gtcc |
1161523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 1161003 - 1161186
Alignment:
| Q |
1 |
agagccatagctcaagcctctgtggtgttgtgattgtttgtttttgtggttctagagatcaattgttttctataggttatgtct--------ttggggtg |
92 |
Q |
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| T |
1161003 |
agagccataactcaagcctctgtagtgttgtgattgtttgtttttgtggttctagagatcaattgttttctataggttatgtctttgggtctttggggtg |
1161102 |
T |
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| Q |
93 |
atgttccgcctatatgcggcatctttgtttttattgccaccgtctgtttgcgttttgcgagagttttcggattaataatatttg |
176 |
Q |
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| T |
1161103 |
atgttccgcctatatgtggcatctttgtttttattgccaccgtctctttgcgtcttgcgagagttttcggattaataatatttg |
1161186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 346 - 501
Target Start/End: Complemental strand, 879883 - 879715
Alignment:
| Q |
346 |
cccggttgagttgaatgaataatgttgtacatcgatttgttca---------------gtatccttttcattattttaacagcaagacctgcaggtcata |
430 |
Q |
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| T |
879883 |
cccggttgagttgaatgaataatgttgtacatcgactagttcagaggttagaccgagtgtatccttttcattattataacagcaagac---caggtcata |
879787 |
T |
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| Q |
431 |
ctatta-ttagtcttgtgattcttctctttgcagaacttaaaatggttagtgtagcaagcaactgtttgatg |
501 |
Q |
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| T |
879786 |
ctattatttagtcttgtgattcttctctttgcagaacttaaaatggtaaatgtagcaagcaagtgttcgatg |
879715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 880107 - 880022
Alignment:
| Q |
204 |
tttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaa |
289 |
Q |
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| T |
880107 |
tttgtctattttgtgagccttcatgacaaatatatttgcagagaatcattgctaacccaattcaaagaggttttttgcttcttgaa |
880022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 879994 - 879941
Alignment:
| Q |
290 |
gatgcatgtaagctgaatgatgcatcttgtatacttagatactcatcttatata |
343 |
Q |
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| T |
879994 |
gatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatata |
879941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 6645961 - 6645865
Alignment:
| Q |
88 |
gggtgatgttccgcctatatgcggcatctttgt--ttttattgccaccgtctgtttgcgttttgcgagagttttcggattaataatatttgtcatttc |
183 |
Q |
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| T |
6645961 |
gggtgatgttacgcctatatgcagcatctttgtactttttctgttaccgtctcttagcatattgcgagag-ttccggtttaataatatttgtcatttc |
6645865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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