View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_19 (Length: 483)
Name: NF12023_low_19
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 10371501 - 10371965
Alignment:
| Q |
17 |
atgatgaatttcagctaatgggtgtaacgctagacataaagacattcaacatgaacatgatgataaggtcctatggcaaagcaggcatgtatgataaaat |
116 |
Q |
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| T |
10371501 |
atgatgaatttcagctaatgggtgtaacgctagacataaagacattcaacatgaacatgatgataaggtcctatggcaaagcaggcatgtatgataaaat |
10371600 |
T |
|
| Q |
117 |
caagaacgtggatttcatggagaggtggtttttcgctccgacaattgtaacatataataccgtcactgaagtttatgacacagcatgagaaattgagaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10371601 |
caagaacgtggatttcatggagaggtggtttttcgctccgacaattgtaacatataatatcgtcactgaagtttatgacacagcatgagaaattgagaag |
10371700 |
T |
|
| Q |
217 |
atttatatacactccaaaaacttaattccatttttgctgtgggggtgacggttgaaattacatttcctgctgtcaaaagaagttttgattgtac-----t |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10371701 |
atttatatacactccaaaaacttaattccatttttgctgtgggggtgacggttgaaattacatttcctgctgtcaaaagaagttttgattgtacatagtt |
10371800 |
T |
|
| Q |
312 |
gaaggaattgattgtaaaaagaagttttggtcctgactttctagattttgtagcaggttttgtattaatcccaatcaaaaatattttttctatagcttaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10371801 |
gaaggaattgattgtaaaaagaagttttggtcctgactttctagattttgtagcaggttttgtattaatcccaatcaaaaatattttttctatagcttaa |
10371900 |
T |
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| Q |
412 |
aatatattaaagttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
476 |
Q |
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| T |
10371901 |
aatatattaaagttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
10371965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 10489448 - 10489250
Alignment:
| Q |
17 |
atgatgaatttcagctaatgggtgtaacgctagacataaagacattcaacatgaacatgatgataaggtcctatggcaaagcaggcatgtatgataaaat |
116 |
Q |
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|||||||||||||||||||| | ||| || ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| || |
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| T |
10489448 |
atgatgaatttcagctaatgagcataaagccagacataaagacattcaacatga------tgataaagtcgtatggcaaagcaggcatgtacgataagat |
10489355 |
T |
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| Q |
117 |
caagaacg---tggatttcatggagaggtggtttttcgctccgacaattgtaacatataataccgtcactgaagtttatgacacagcatgagaaattgag |
213 |
Q |
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|||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||| |
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| T |
10489354 |
gaagagtgtgatggatttcatggagaggaggtttttcgctccaacaattgtaacatataataccgtcattgaagtttatggcaaagccggagaaattgag |
10489255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 9853803 - 9853703
Alignment:
| Q |
71 |
acatgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacg-tggatttcatggagaggtggtttttcgctccgacaattgtaacat |
169 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||| |||| | |||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
9853803 |
acatgatgataaagtcctagggcaaagcaggcatgtatgataaaataaagactgacggatttcatggagaggaggttttttgctccgacaattgtaacat |
9853704 |
T |
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| Q |
170 |
a |
170 |
Q |
| |
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| |
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| T |
9853703 |
a |
9853703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 9843106 - 9843007
Alignment:
| Q |
74 |
tgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacgt---ggatttcatggagaggtggtttttcgctccgacaattgtaacata |
170 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||| || ||||||| |||||||||||||||||||| |
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| T |
9843106 |
tgatgataaagtcctatggcaaagcaggcatgtatgataaaataaagacagtgacggatttcatggagcggaggttttttgctccgacaattgtaacata |
9843007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 10093919 - 10093841
Alignment:
| Q |
398 |
tttctatagcttaaaatatattaaagttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
476 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||| |
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| T |
10093919 |
tttctatagcttaaaacatattaaagttcaattgtgtgaaaataaatatgcatgttagaccagtttctattttctgctc |
10093841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 10200801 - 10200723
Alignment:
| Q |
398 |
tttctatagcttaaaatatattaaagttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
476 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||| |
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| T |
10200801 |
tttctatagcttaaaacatattaaagttcaattgtgtgaaaataaatatgcatgttagaccagtttctattttctgctc |
10200723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 10100675 - 10100633
Alignment:
| Q |
357 |
ttttgtagcaggttttgtattaatcccaatcaaaaatattttt |
399 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
10100675 |
ttttgtatcaggttttgtatttttcccaatcaaaaatattttt |
10100633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 10208584 - 10208542
Alignment:
| Q |
357 |
ttttgtagcaggttttgtattaatcccaatcaaaaatattttt |
399 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
10208584 |
ttttgtatcaggttttgtatttttcccaatcaaaaatattttt |
10208542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 32311858 - 32311911
Alignment:
| Q |
17 |
atgatgaatttcagctaatgggtgtaacgctagacataaagacattcaacatga |
70 |
Q |
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| T |
32311858 |
atgatgaatttcagctaatgggtgtaacgccagacataaagacattcaacatga |
32311911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 32311998 - 32312053
Alignment:
| Q |
126 |
ggatttcatggagaggtggtttttcgctccgacaattgtaacatataataccgtca |
181 |
Q |
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|||||||||||||||| ||||||||| ||| ||| ||||||||||||| ||||||| |
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| T |
32311998 |
ggatttcatggagaggaggtttttcgttccaacagttgtaacatataacaccgtca |
32312053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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