View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_2 (Length: 833)
Name: NF12023_low_2
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 461 - 830
Target Start/End: Original strand, 27637431 - 27637800
Alignment:
| Q |
461 |
acaaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaa |
560 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
27637431 |
acaaaataaatgaaacatcatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgagctattgtaataacatttttgacag |
27637530 |
T |
|
| Q |
561 |
taatatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg |
660 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637531 |
taatatcaattttaaatcgaattctgaatctcgataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg |
27637630 |
T |
|
| Q |
661 |
aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct |
760 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637631 |
aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct |
27637730 |
T |
|
| Q |
761 |
gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctcc |
830 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27637731 |
gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcc |
27637800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 463 - 830
Target Start/End: Original strand, 37353626 - 37353993
Alignment:
| Q |
463 |
aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata |
562 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||| ||| |||||| | || |
|
|
| T |
37353626 |
aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta |
37353725 |
T |
|
| Q |
563 |
atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa |
662 |
Q |
| |
|
|||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37353726 |
atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa |
37353825 |
T |
|
| Q |
663 |
gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga |
762 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| | |
|
|
| T |
37353826 |
gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta |
37353925 |
T |
|
| Q |
763 |
cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctcc |
830 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37353926 |
cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttactctctccttctcc |
37353993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 463 - 830
Target Start/End: Original strand, 37365600 - 37365967
Alignment:
| Q |
463 |
aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata |
562 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||| ||| |||||| | || |
|
|
| T |
37365600 |
aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta |
37365699 |
T |
|
| Q |
563 |
atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa |
662 |
Q |
| |
|
|||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37365700 |
atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa |
37365799 |
T |
|
| Q |
663 |
gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga |
762 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| | |
|
|
| T |
37365800 |
gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta |
37365899 |
T |
|
| Q |
763 |
cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctcc |
830 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37365900 |
cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttactctctccttctcc |
37365967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 574 - 755
Target Start/End: Complemental strand, 12292680 - 12292496
Alignment:
| Q |
574 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
673 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
12292680 |
aaatcaaattctgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcct |
12292581 |
T |
|
| Q |
674 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttca |
755 |
Q |
| |
|
|||||| | |||||||||| | | |||||| |||||||||| |||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
12292580 |
acatggtataaataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttca |
12292496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 585 - 804
Target Start/End: Complemental strand, 12242929 - 12242707
Alignment:
| Q |
585 |
tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa |
684 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
12242929 |
tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa |
12242830 |
T |
|
| Q |
685 |
ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca |
781 |
Q |
| |
|
|||||||| | || | |||| ||||| |||| ||||||| | ||||||| ||||||| ||||| |||||| ||| || || || |||||||| || |
|
|
| T |
12242829 |
ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca |
12242730 |
T |
|
| Q |
782 |
acttgattccgcgtcattttcca |
804 |
Q |
| |
|
|| ||| | || |||||||||| |
|
|
| T |
12242729 |
acatgagtttgcatcattttcca |
12242707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 39209715 - 39209354
Alignment:
| Q |
19 |
tggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtgattgtttctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39209715 |
tggatggtggcaaggagaaggaggtgaggggaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtgattgtttctc |
39209616 |
T |
|
| Q |
119 |
ttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgcagtgtgtgtgcaccgtccaatgtggagttatcatcatcacctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
39209615 |
ttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgcagtatg----caccgtccaatgtggagttatcatcatcaccta |
39209520 |
T |
|
| Q |
219 |
tgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggtacatgcatgttttacaacataagggtatcaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39209519 |
tgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacattgcgagcaatgtatggtacatgcatgttttacaacataagggtaccaac |
39209420 |
T |
|
| Q |
319 |
gtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgat |
384 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
39209419 |
gtaattttgtcccaaaaattcataaattaaatttttcccgcccggcgaactgcagttaaaaatgat |
39209354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 449
Target Start/End: Original strand, 27514152 - 27514589
Alignment:
| Q |
20 |
ggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacct----------ttatgttggtggtga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
27514152 |
ggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacttaggtttggatttatgttggtgatga |
27514251 |
T |
|
| Q |
110 |
ttgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtca-cctcttgtgcagtgtgtgtgcaccgtccaatgtggagttatca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27514252 |
ttgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcagcaattggtcaacctcttgtgcagtgtg----caccgtccaatgtggagttatca |
27514347 |
T |
|
| Q |
209 |
tcatcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggt-acatgcatgttttacaacata |
307 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
27514348 |
tcatgacccctgagcataaacaacgtgatgcagcaggtttgaaatttccattctccaacatggcgagcaatgtatggttacatgcaagttttacaacata |
27514447 |
T |
|
| Q |
308 |
agggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaattag |
407 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||| || ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27514448 |
agggtataaacgtaattttgtcccaaaaactcattaattaaatttttcccgcccgattaactgcagttgaaaatgatggattttcaaaggattaaattag |
27514547 |
T |
|
| Q |
408 |
ggcaaacttgcaggtttgtgttccatttataatattatgata |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27514548 |
ggcaaacttgcaggtttgtgttccatttataatattatgata |
27514589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 574 - 829
Target Start/End: Original strand, 34697785 - 34698043
Alignment:
| Q |
574 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
673 |
Q |
| |
|
|||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||| |
|
|
| T |
34697785 |
aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct |
34697884 |
T |
|
| Q |
674 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc |
770 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| |
|
|
| T |
34697885 |
acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca |
34697984 |
T |
|
| Q |
771 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctc |
829 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||| |||||| |||||| |
|
|
| T |
34697985 |
ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctcttcttctc |
34698043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 574 - 829
Target Start/End: Original strand, 34720197 - 34720455
Alignment:
| Q |
574 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
673 |
Q |
| |
|
|||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||| |
|
|
| T |
34720197 |
aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct |
34720296 |
T |
|
| Q |
674 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc |
770 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| |
|
|
| T |
34720297 |
acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca |
34720396 |
T |
|
| Q |
771 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctc |
829 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||| |||||| |||||| |
|
|
| T |
34720397 |
ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctcttcttctc |
34720455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 583 - 664
Target Start/End: Original strand, 27909926 - 27910007
Alignment:
| Q |
583 |
tctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga |
664 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||| ||||||||| || ||||||||| | ||| ||||||||||||| |
|
|
| T |
27909926 |
tctgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga |
27910007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 305 - 432
Target Start/End: Complemental strand, 23017092 - 23016965
Alignment:
| Q |
305 |
ataagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaat |
404 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23017092 |
ataagggtataaatgtaattttgtcccaaaaactcattaattaaatttttcccgcccgatgaactgcagttgaaaatgatggattttcaaaggattaaat |
23016993 |
T |
|
| Q |
405 |
tagggcaaacttgcaggtttgtgttcca |
432 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
23016992 |
tagggaaaacttgcaggtttgtgttcca |
23016965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 448
Target Start/End: Original strand, 36407015 - 36407074
Alignment:
| Q |
389 |
tttcaaaggattaaattagggcaaacttgcaggtttgtgttccatttataatattatgat |
448 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
36407015 |
tttcaaaggaacaaattagggcaaatttgcagcttggtgttccatttataatattatgat |
36407074 |
T |
|
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