View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_20 (Length: 482)
Name: NF12023_low_20
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_20 |
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| [»] chr7 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 3020386 - 3019911
Alignment:
| Q |
7 |
atgaagtgatattttagaaatgaattatgatgttaggtgttgtttgaggagttatttcaatctaagggttctgatataatttttgaaggtcactcacatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
3020386 |
atgaagtgatattttagaaatgaattatgatgttaggtgttgtttgaggagttatttcaatctaagagttctaatatagtttttgaaggtcactcacatc |
3020287 |
T |
|
| Q |
107 |
tacacatggatgtgattcatgaagttgagatgagcattgaaagtcaatttaatgatgaagatggaaattatgtggcacaaaccagttccaagtcttccac |
206 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3020286 |
tacacatggatgttattcatgaagttgagatgagcaatgaaagtcaatttaatgatgaagatggaaattatgtggcacaaaccaattccaagtcttccac |
3020187 |
T |
|
| Q |
207 |
agagggatttaatccagcttctttggagatccttgatcatgtgaagatcaatgtcataacaccagaaactcctgtttcaaccatcaaagagcttctgtta |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3020186 |
agagggatttaaaccagcttctttggagatccttgatcatgtgaagatcaatgtgataacaccagaaactcctgtttcaaccatcaaagggcttctgtta |
3020087 |
T |
|
| Q |
307 |
agttcaaaatctgaccaaacatttagcaagaaagagcttaggaaagcagatgagcaacttagcacagccttaaaggaattctatcataagcttaggctcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3020086 |
agttcaaaatctgaccaaacatttagcaagaaagagcttaggaaagcagatgtgcaacttagcacagccttaaaggaattctatcataagcttaggcttc |
3019987 |
T |
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| Q |
407 |
taaaacgatacaggtgacatggtttcttccttcgnnnnnnnaacttagggactgtttggattgacttatttgagct |
482 |
Q |
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| T |
3019986 |
taaaacgatacaggtgacatggtttcttccttcgtttttttaacttcgggactgttttgattgacttatttgagct |
3019911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 7 - 435
Target Start/End: Complemental strand, 3010326 - 3009898
Alignment:
| Q |
7 |
atgaagtgatattttagaaatgaattatgatgttaggtgttgtttgaggagttatttcaatctaagggttctgatataatttttgaaggtcactcacatc |
106 |
Q |
| |
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|||||||| ||||| | ||||||||||| |||||||||||| ||||||||||| || ||||||||||||||| |||| |||||| ||||||||||||||| |
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| T |
3010326 |
atgaagtggtatttcataaatgaattataatgttaggtgttttttgaggagttgttgcaatctaagggttctaatatcatttttcaaggtcactcacatc |
3010227 |
T |
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| Q |
107 |
tacacatggatgtgattcatgaagttgagatgagcattgaaagtcaatttaatgatgaagatggaaattatgtggcacaaaccagttccaagtcttccac |
206 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||| | ||||||| ||||||| ||||||| |
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| T |
3010226 |
aacacatggatgtgattcatgaagatgagatgagcaatgaaagtcattttaatgatgaagatggaaataatgtgtctcaaaccaattccaagacttccac |
3010127 |
T |
|
| Q |
207 |
agagggatttaatccagcttctttggagatccttgatcatgtgaagatcaatgtcataacaccagaaactcctgtttcaaccatcaaagagcttctgtta |
306 |
Q |
| |
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||||||||||| ||||||| ||| || |||||||||||||||||||||||||| | ||||||| |||||||| |||||||| |||| |||||| ||| |
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| T |
3010126 |
agagggatttagaccagcttttttcgatatccttgatcatgtgaagatcaatgtgaacgcaccagatactcctgtatcaaccataaaagggcttctctta |
3010027 |
T |
|
| Q |
307 |
agttcaaaatctgaccaaacatttagcaagaaagagcttaggaaagcagatgagcaacttagcacagccttaaaggaattctatcataagcttaggctcc |
406 |
Q |
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||| ||||||||||| |||||||||||||||| || || |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| | |
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| T |
3010026 |
agtgcaaaatctgacaaaacatttagcaagaatgaactcaggaaagcagatgagcaaattagcaaagccttaaaggaattctataataagcttaggcttc |
3009927 |
T |
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| Q |
407 |
taaaacgatacaggtgacatggtttcttc |
435 |
Q |
| |
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||||| |||||||||||||||| |||||| |
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| T |
3009926 |
taaaaagatacaggtgacatggcttcttc |
3009898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 85 - 439
Target Start/End: Complemental strand, 3038664 - 3038313
Alignment:
| Q |
85 |
atttttgaaggtcactcacatctacacatggatgtgattcatgaagttgagatgagcattgaaagtcaatttaatgatgaagatggaaattatgtggcac |
184 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| | || ||||||||| |||| ||| ||||| |
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| T |
3038664 |
atttttgaaggtcactcaactctacacatggacgtgattcatgaagttgagatgagcc---aaagtcattcgaacgatgaagatataaatcatgcggcac |
3038568 |
T |
|
| Q |
185 |
aaaccagttccaagtcttccacagagggatttaatccagcttctttggagatccttgatcatgtgaagatcaatgtcataacaccagaaactcctgtttc |
284 |
Q |
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|||| | ||||||| |||||| | |||| |||| |||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| || |
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| T |
3038567 |
aaactaattccaagacttccatacagggttttagaccagctcctttagagattcttgatcatgtgaagatcaatgtgatcacaccagaaactcctgtatc |
3038468 |
T |
|
| Q |
285 |
aaccatcaaagagcttctgttaagttcaaaatctgaccaaacatttagcaagaaagagcttaggaaagcagatgagcaacttagcacagccttaaaggaa |
384 |
Q |
| |
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|||||| |||| | |||| |||||||||||||| || | ||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||| || |
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| T |
3038467 |
aaccataaaagggattcttgtaagttcaaaatctaacatagaatttaacaagaaagaacttaggaaagcagatgagcaacttagcgcagccctaaaagag |
3038368 |
T |
|
| Q |
385 |
ttctatcataagcttaggctcctaaaacgatacaggtgacatggtttcttccttc |
439 |
Q |
| |
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|| ||||||||||| ||||| ||||| |||||||||||||| | |||||||||| |
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| T |
3038367 |
ttttatcataagctaaggcttctaaagagatacaggtgacatagcttcttccttc |
3038313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 85 - 439
Target Start/End: Original strand, 20058673 - 20059027
Alignment:
| Q |
85 |
atttttgaaggtcactcacatctacacatggatgtgattcatgaagttgagatgagcattgaaagtcaatttaatgatgaagatggaaattatgtggcac |
184 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||| |||||||| |
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| T |
20058673 |
atttttgaaggtcactcaaatctacacatggatgtgattcatgaagttgagatgagcc---aaagtcatttgagtgatgaagatggaaatcgtgtggcac |
20058769 |
T |
|
| Q |
185 |
aaaccagttccaagtc---ttccacagagggatttaatccagcttctttggagatccttgatcatgtgaagatcaatgtcataacaccagaaactcctgt |
281 |
Q |
| |
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|||| | ||| || | ||||| |||||| |||| |||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
20058770 |
aaactaattctaacacaaattccatagagggttttagaccagctcctttagagattcttgatcatgtgaagatcaatgtgatcacaccagaaactcctgt |
20058869 |
T |
|
| Q |
282 |
ttcaaccatcaaagagcttctgttaagttcaaaatctgaccaaacatttagcaagaaagagcttaggaaagcagatgagcaacttagcacagccttaaag |
381 |
Q |
| |
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|||||||| |||| |||||| |||| ||||||| ||||| | ||||| |||||||||||||||||||||||||||||| |||||| ||||||| || |
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| T |
20058870 |
atcaaccataaaagggcttctcttaaattcaaaacctgacatagaatttaacaagaaagagcttaggaaagcagatgagcagcttagcgcagccttgaaa |
20058969 |
T |
|
| Q |
382 |
gaattctatcataagcttaggctcctaaaacgatacaggtgacatggtttcttccttc |
439 |
Q |
| |
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|| || ||||||||||| ||||| |||||| |||||||||||||| | |||||||||| |
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| T |
20058970 |
gagttttatcataagctaaggcttctaaaaagatacaggtgacatagcttcttccttc |
20059027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 21405064 - 21405096
Alignment:
| Q |
450 |
cttagggactgtttggattgacttatttgagct |
482 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
21405064 |
cttagggtctgtttggattgacttatttgagct |
21405096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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