View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_21 (Length: 472)

Name: NF12023_low_21
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_21
NF12023_low_21
[»] chr8 (10 HSPs)
chr8 (18-462)||(1948587-1949032)
chr8 (18-271)||(2029315-2029568)
chr8 (18-253)||(2050624-2050859)
chr8 (18-254)||(2033891-2034127)
chr8 (50-256)||(2057854-2058060)
chr8 (18-226)||(2055060-2055268)
chr8 (25-244)||(2037465-2037684)
chr8 (50-253)||(2046709-2046912)
chr8 (50-244)||(10768366-10768560)
chr8 (52-112)||(2022898-2022958)
[»] chr4 (1 HSPs)
chr4 (64-189)||(48906929-48907054)
[»] chr7 (1 HSPs)
chr7 (401-453)||(4160653-4160705)
[»] chr2 (3 HSPs)
chr2 (18-105)||(28700377-28700464)
chr2 (18-105)||(28735378-28735465)
chr2 (18-105)||(28783447-28783534)
[»] chr5 (1 HSPs)
chr5 (403-441)||(7570360-7570398)


Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 1948587 - 1949032
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1948587 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaat 1948686  T
Q  118 cagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgt 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1948687 cagcccttcagtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgt 1948786  T
Q  218 ttcccatattctagggttatatctctgtaagaataagtaaatgagagttaaattaattttaaaatgtttcggccagttcgaagcacatgatattgcaaga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||    
T  1948787 ttcccatattctagggttatatctctgtaagaataagtaaatgagaattaaattaattttaaaatgtttcggtcagttcgaagcacatgatactacaaga 1948886  T
Q  318 gatatgatataatataaagcatgataaagatatgatatgatttctttttactaataatatcttcgatcgaaaggtaag-gaagcccgacaaaaaattgtt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  1948887 gatatgatataatataaagcatgataaagatatgatatgatttctttttactaataatatcttcgatcgaaaggtaagaaaagcccgacaaaaaattgtt 1948986  T
Q  417 cgatctagaaatcgaactgaggttcttttaaacaattcgtcctttg 462  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1948987 cgatctagaaatcgaactgaggttcttctaaacaattcgtcctttg 1949032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 2029568 - 2029315
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaat 117  Q
    |||| |||||||||||||| |||  || |||  ||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  2029568 cttggagaagcactgtgaggaaatcattgtcacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaagagcaat 2029469  T
Q  118 cagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgt 217  Q
     |||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| || ||| |||||||||||||| |||    
T  2029468 tagcccttcggcacaacccatatcttttagatggtttggattcaaacctaaagcttgtgacaacaattcaaacagcaaagttcctagattcatcacctgt 2029369  T
Q  218 ttcccatattctagggttatatctctgtaagaataagtaaatgagagttaaatt 271  Q
    ||||||||||||||   |||||||||| |||||| |||||||||||| ||||||    
T  2029368 ttcccatattctagtagtatatctctgcaagaattagtaaatgagagctaaatt 2029315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 2050859 - 2050624
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaat 117  Q
    |||| |||||||||||||| |||  ||  || |||||||| |||||||| | ||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  2050859 cttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggaggataataatggcaaagagcaat 2050760  T
Q  118 cagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgt 217  Q
     |||||||| | ||||||||||||||||||||||||||| ||||  ||||| ||||||||||  |||||||| |  | ||| |||||||||||||| |||    
T  2050759 tagcccttcagcacaacccatatcttttagatggtttggattcagtcctaaagcttctgacatcaattcaaatagtaaagttcctagattcatcacctgt 2050660  T
Q  218 ttcccatattctagggttatatctctgtaagaataa 253  Q
    ||||||||||||||  ||| ||||||||||||||||    
T  2050659 ttcccatattctagtattacatctctgtaagaataa 2050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 2034127 - 2033891
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaat 117  Q
    ||||||||||||||||||| |||  ||  || |||||||| |||||||| | ||||| ||||||||||||||||| ||| || |||||||||| ||||||    
T  2034127 cttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaat 2034028  T
Q  118 cagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgt 217  Q
    ||||||||| | |||| |||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| || | ||||||||||||||||| || |    
T  2034027 cagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtat 2033928  T
Q  218 ttcccatattctagggttatatctctgtaagaataag 254  Q
    |||||||||| ||    |||||||||| |||||||||    
T  2033927 ttcccatattgtaacagtatatctctgcaagaataag 2033891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 2058060 - 2057854
Alignment:
Q  50 gaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaatcagcccttcggtacaacccatatcttttagat 149  Q
    |||||||| |||||||||| ||||| ||||||||| ||| |||||||||||||||| |||| |||||| |||||||| | ||||||||||||||||||||    
T  2058060 gaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgacaaagagcaattagcccttcagcacaacccatatcttttagat 2057961  T
Q  150 ggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgtttcccatattctagggttatatctctgtaaga 249  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||  | ||| |||||||||||||| ||||||||||||| |||  | | ||||||| ||||    
T  2057960 ggtttggattcaaacctaaagcttctgacaacaattcaaacagtaaagttcctagattcatcacttgtttcccatattatagtatcacatctctgcaaga 2057861  T
Q  250 ataagta 256  Q
    | |||||    
T  2057860 acaagta 2057854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 2055268 - 2055060
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaat 117  Q
    |||| |||||||||||||| |||  ||  || |||||||| |||||||| | ||||| ||||||||||||||||| ||| || |||||||||| ||||||    
T  2055268 cttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaat 2055169  T
Q  118 cagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgt 217  Q
    ||||||||| | |||| |||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| || | ||||||||||||||||| ||||    
T  2055168 cagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtgt 2055069  T
Q  218 ttcccatat 226  Q
    |||||||||    
T  2055068 ttcccatat 2055060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 2037684 - 2037465
Alignment:
Q  25 aagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaatcagccct 124  Q
    ||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||  || |||    
T  2037684 aagcactgtgagaaaaccatggtctgaatgcttggctgttcccacagtcaattctggttccggacaagaaggataataatggcaaagagcaaatagtcct 2037585  T
Q  125 tcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgtttcccat 224  Q
    |  | |||| |||||||||||||||||||||| |||| |||||| |||||||| || |||| |||||  |  |||||||||||  ||| |||||| ||||    
T  2037584 ttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattaaaacagtaaggtccctagatttgtcatgtgttttccat 2037485  T
Q  225 attctagggttatatctctg 244  Q
    |||||||   ||||||||||    
T  2037484 attctagaagtatatctctg 2037465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 50 - 253
Target Start/End: Complemental strand, 2046912 - 2046709
Alignment:
Q  50 gaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaatcagcccttcggtacaacccatatcttttagat 149  Q
    |||| ||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||  | |||||  |||||| |||||||||||||||    
T  2046912 gaatacttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaagagcaaataacccttgagtacaatccatatcttttagat 2046813  T
Q  150 ggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgtttcccatattctagggttatatctctgtaaga 249  Q
    | ||||| | |||||||||  |||| || || ||||||||||| | ||||||||||||||||| |||||| |||||||||||  ||||||||||| ||||    
T  2046812 gatttggatgcaaacctaaatcttcagataacaattcaaacaataaagtccctagattcatcatgtgttttccatattctagtattatatctctgcaaga 2046713  T
Q  250 ataa 253  Q
    ||||    
T  2046712 ataa 2046709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 10768560 - 10768366
Alignment:
Q  50 gaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaatcagcccttcggtacaacccatatcttttagat 149  Q
    |||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||| |  | |||||  |  ||||| | |||| | |||||||||||||    
T  10768560 gaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatgaccgagagcaagtaatccttcagcacaatcaatatcttttagat 10768461  T
Q  150 ggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgtttcccatattctagggttatatctctg 244  Q
    ||||||| |||| |||||| ||||||||  | | ||||||||| | ||||||||| ||  ||| |||||| |||||||||||   ||||||||||    
T  10768460 ggtttggattcagacctaaagcttctgagcatagttcaaacaataaagtccctaggtttctcatgtgttttccatattctagcaatatatctctg 10768366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 2022958 - 2022898
Alignment:
Q  52 atgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaaca 112  Q
    |||||| ||| |||||| ||||| ||||||||| ||||| |||||||| ||||||||||||    
T  2022958 atgcttggttattcccaaagtcaattctggttctggacaggaaggatagtaatggcaaaca 2022898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 48906929 - 48907054
Alignment:
Q  64 tcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaa 163  Q
    ||||| |||||  ||||||||||| || | |||||||||||||||| ||||||| ||||||||   ||||||||||||||||||||||||||| |||| |    
T  48906929 tcccacagtcaaatctggttcagggcatggaggataataatggcaagcagcaattagcccttcaacacaacccatatcttttagatggtttggattcaga 48907028  T
Q  164 cctaatgcttctgacaaaaattcaaa 189  Q
    ||||| ||||||||||  ||||||||    
T  48907029 cctaaagcttctgacagcaattcaaa 48907054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 4160653 - 4160705
Alignment:
Q  401 ccgacaaaaaattgttcgatctagaaatcgaactgaggttcttttaaacaatt 453  Q
    ||||||||||||||||  |||||||||| ||||| ||||||| ||||||||||    
T  4160653 ccgacaaaaaattgttacatctagaaattgaactcaggttctcttaaacaatt 4160705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 28700377 - 28700464
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatg 105  Q
    |||| |||||||||||||||||||||   || ||||| || || |||||||| || |  |||||||||||||||| |||||| |||||    
T  28700377 cttggagaagcactgtgagaaaactaacatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 28700464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 28735378 - 28735465
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatg 105  Q
    |||| |||||||||||||||||||||   || ||||| || || |||||||| || |  |||||||||||||||| |||||| |||||    
T  28735378 cttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 28735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 28783447 - 28783534
Alignment:
Q  18 cttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatg 105  Q
    |||| ||||||| ||||||||||| |   || ||||| || || ||||||||||| | ||||||||||||||||| |||||| |||||    
T  28783447 cttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg 28783534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 441
Target Start/End: Original strand, 7570360 - 7570398
Alignment:
Q  403 gacaaaaaattgttcgatctagaaatcgaactgaggttc 441  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  7570360 gacaaaaaattgttcaatctagaaatcgaactcaggttc 7570398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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