View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_22 (Length: 447)
Name: NF12023_low_22
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 46772667 - 46773113
Alignment:
| Q |
18 |
aattcaaattcgattatgaatggaacaattatttctcggattttacttaactaactccaactgaacttcaggttataacctttttctatgggaaattgga |
117 |
Q |
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| T |
46772667 |
aattcaaattcgattatgaatggaacaattatttctcggattttacttaactaactccgactgaacttcaggttataacctttttctatgggaaattgga |
46772766 |
T |
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| Q |
118 |
tggttaacattaaaatg---------------------caacaagacgtacaagaaaacgaaacctagtgtgtgattttgacattgaaatgcttgtctgc |
196 |
Q |
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| T |
46772767 |
tggttaacattaaaaaggaaaaaacactattattaatccaacaagacgtacaagaaaacgaaacctagtgtgtgattttgacattgaaatgcttgtctgc |
46772866 |
T |
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| Q |
197 |
aaagtgggcaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtctgtatcacaactccaagatgcaaagagt |
296 |
Q |
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| T |
46772867 |
aaagtggacaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtctgtatcacaactccaagatgcaaagagt |
46772966 |
T |
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| Q |
297 |
cctctagcaaggcgcacagcatgtcgcagttcctctttgctcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctcca |
396 |
Q |
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| T |
46772967 |
cctctagcaaggcgcacagcatgtcgcagttcctctttgctcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctcca |
46773066 |
T |
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| Q |
397 |
ccgtcatcacacgcttgccatgatgacaattgaaccctctgtgctcc |
443 |
Q |
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| T |
46773067 |
ccgtcatcacacgctttccatgatgaccattgaaccctttgtgctcc |
46773113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 142 - 422
Target Start/End: Original strand, 46768026 - 46768309
Alignment:
| Q |
142 |
acgtacaagaaaacgaaacctag---tgtgtgattttgacattgaaatgcttgtctgcaaagtgggcaaggtttctgacttcattttcatcaatgaaacc |
238 |
Q |
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| T |
46768026 |
acgtacgaggaaacgaaacctaggactgtttgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaacc |
46768125 |
T |
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| Q |
239 |
gttgtggttggcgtctgcaaacttgaagtctgtatcaca-actccaagatgcaaagagtcctctagcaaggcgcacagcatgtcgcagttcctctttgct |
337 |
Q |
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| T |
46768126 |
gttatgattggtgtctgcagcgtaaaagtctgga-catatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgct |
46768224 |
T |
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| Q |
338 |
cattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctccaccgtcatcacacgcttgccatgatga |
422 |
Q |
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| T |
46768225 |
gattttgccatcattttttgtgtcaaatgttgtcttcaaccataacttgaattgctccaccgtcatcacacgtttcccttgatga |
46768309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 5983178 - 5983114
Alignment:
| Q |
186 |
tgcttgtctgcaaagtgggcaaggtttctgacttcattttcatcaatgaaaccgttgtggttggc |
250 |
Q |
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| T |
5983178 |
tgcttctctgcaaagtgcgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggc |
5983114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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