View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_24 (Length: 442)
Name: NF12023_low_24
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 28191493 - 28191084
Alignment:
| Q |
19 |
cctctacagcaactccatagagtgaagtgaccgtagaaaccgttagagtctagtgaaaaattaaagaaggaaaagtagtgacaaatgacgatagagttta |
118 |
Q |
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| T |
28191493 |
cctctacagcaactccatagagtgaagtgaccgtagaaaccgttagagtctagtgaaaaattaaagaaggaaa-gtagtgacaaatgacgatagagttta |
28191395 |
T |
|
| Q |
119 |
tctgtttaagggaagtctaggagtgccaagtatcattttcttcagaaagaaataaaaaatcgaatcaatatgttttatatcatggttggtgccatgccta |
218 |
Q |
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| T |
28191394 |
tctgtttaagggaagtctaggagtgccaagtatcatattcttcagaaagaaataaaaaatcgaatcaatatgttttatatcatggttggtgccatgccta |
28191295 |
T |
|
| Q |
219 |
taaatcaggttatgatatgatgtcagtataagtgaagtggcttcgatgggattcaatcctgggattaaacaatcacctgaagggacctaatgtgcacaaa |
318 |
Q |
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| T |
28191294 |
taaatcaggttatgatatgatgtcagtataagtgaagtggcttcgatgggattcaatcctgggattaaacaatcacctgaagggacctaatgtgcacaaa |
28191195 |
T |
|
| Q |
319 |
tatgttttctaaacaataaacaatgaaaataacacctccaaagagggtggtgatggtgactgacttcctcaccaagacaaaatcagttacatcaaataaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28191194 |
tatgttttctaaacaataaacaatgaaaataacacctccaaagacggtggtgatggtgactgacttcctcaccaagacaaaatcagttacatcaaataaa |
28191095 |
T |
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| Q |
419 |
tgtctctgtct |
429 |
Q |
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||||||||||| |
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| T |
28191094 |
tgtctctgtct |
28191084 |
T |
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