View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_25 (Length: 438)
Name: NF12023_low_25
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 13799139 - 13799555
Alignment:
| Q |
18 |
acatcacgtttttaagatgttaattcaaattttcacttattctgtatactggaaaatgataaagt-tggtctaatagtgccgaagttaacattattttta |
116 |
Q |
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| T |
13799139 |
acatcacgtgtttaagatgttaattcaaattttcacttattctgcatacaggaaaatgataaaggctggcctaatagtgccgaagttaacaataatttta |
13799238 |
T |
|
| Q |
117 |
tgaggtgaccacgtatnnnnnnnnnnn-tatattgatggatttttctaattgatccttgcatatgaaagcaatctcccctatgcactatactacattcac |
215 |
Q |
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| T |
13799239 |
tgaggtggccacatataaagaaaaataatatattgatggatttatctaattgatccttgcatatgtaagcaatcgcctctatgcactatactacattcac |
13799338 |
T |
|
| Q |
216 |
atttatctaattgatctttattgatggatttagttctatcattataagtcaannnnnnnnnnnnnnnnnatcaaatattttatgccggatctttccaaaa |
315 |
Q |
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| T |
13799339 |
atttatctaattaatctttattgatggatttagttctatcattataagtcaattttttatttattttttatcaaatattttatgccggatctttccaaaa |
13799438 |
T |
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| Q |
316 |
taaaacttcatttatgcatatgcaataatattcataccagattttgttttttaagcattcggtaagcttttaacatataagaagtgatgggatagattga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13799439 |
taaaacttcatttatgcatatgcaataatattcataccagattttgttttttaagcattcggtaagtttttaacatataagaagtgatgggatagattga |
13799538 |
T |
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| Q |
416 |
tcttaaaggttaggctg |
432 |
Q |
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| T |
13799539 |
tcttaaaggctaggctg |
13799555 |
T |
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