View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_28 (Length: 417)

Name: NF12023_low_28
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_28
NF12023_low_28
[»] chr6 (4 HSPs)
chr6 (319-404)||(6131437-6131523)
chr6 (316-404)||(16695714-16695803)
chr6 (131-357)||(16695444-16695660)
chr6 (131-357)||(6131579-6131795)
[»] scaffold0604 (3 HSPs)
scaffold0604 (319-404)||(1582-1668)
scaffold0604 (131-227)||(1840-1938)
scaffold0604 (253-305)||(1774-1824)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 6131523 - 6131437
Alignment:
Q  319 tctcttgtgtctattacacaaacacccctagatcaattcatccattcctttccc-tcgagttctacattgttccaccttctcgtatc 404  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  6131523 tctcttgtgtctattacacaaacacccctagatcaattcattcattcctttcccttcgagttctacatcgttccaccttctcgtatc 6131437  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 316 - 404
Target Start/End: Original strand, 16695714 - 16695803
Alignment:
Q  316 ttctctcttgtgtctattacacaaacacccctagatcaattcatccattcctttccc-tcgagttctacattgttccaccttctcgtatc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||||    
T  16695714 ttctctcttgtgtctattacacaaacacccctagatcaattcattcattcctttccctttgagttctacatcgttccaccttctcgtatc 16695803  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 131 - 357
Target Start/End: Original strand, 16695444 - 16695660
Alignment:
Q  131 aatataaatgcgacacgtagctctattttgtcttttagcaacggccaaaatttcaacccatttcttgtttttacccctttccc--ttcagtaaaatggct 228  Q
    |||||||||||||||| | || |||||||||||||| ||||||  ||||||||||||| ||||| || ||||||| |||| ||  ||||||||||||||     
T  16695444 aatataaatgcgacacatggcactattttgtctttttgcaacgttcaaaatttcaaccgatttcgtgcttttacctctttaccctttcagtaaaatggcc 16695543  T
Q  229 agccaaaatactctctctattgcctattacacaaacacccctggatcaatttctctctcgtgggtcagtttaaaaaagttaaattttttctctcttgtgt 328  Q
    || |||| |           ||| ||||||||||||||| ||| |||||| ||||||| || |||||||||||||||  ||||   ||||||||  ||||    
T  16695544 agtcaaattg----------tgcgtattacacaaacacctctgtatcaatctctctcttgtaggtcagtttaaaaaaaataaaaaatttctctc--gtgt 16695631  T
Q  329 ctattacacaaacacccctagatcaattc 357  Q
    |||||||| ||||||||||||||||||||    
T  16695632 ctattacagaaacacccctagatcaattc 16695660  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 357
Target Start/End: Complemental strand, 6131795 - 6131579
Alignment:
Q  131 aatataaatgcgacacgtagctctattttgtcttttagcaacggccaaaatttcaacccatttcttgtttttacccctttccc--ttcagtaaaatggct 228  Q
    |||||||||||| ||||| || ||||||||||||||||||| || ||||||||||||||||||| || ||||||| |||| |   ||| ||||||||||     
T  6131795 aatataaatgcgccacgtggcgctattttgtcttttagcaatggtcaaaatttcaacccatttcgtgcttttacctctttactctttcggtaaaatggcc 6131696  T
Q  229 agccaaaatactctctctattgcctattacacaaacacccctggatcaatttctctctcgtgggtcagtttaaaaaagttaaattttttctctcttgtgt 328  Q
    || |||| |           ||  |||||| |||||||||||| ||||||||||||||||| ||||||||| |||||  ||||   ||||||||  ||||    
T  6131695 agtcaaattg----------tgtgtattacgcaaacacccctgtatcaatttctctctcgtaggtcagttttaaaaaaataaaaaatttctctc--gtgt 6131608  T
Q  329 ctattacacaaacacccctagatcaattc 357  Q
    |||||||| ||||||||||| ||||||||    
T  6131607 ctattacataaacacccctatatcaattc 6131579  T

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Target: scaffold0604 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 1668 - 1582
Alignment:
Q  319 tctcttgtgtctattacacaaacacccctagatcaattcatccattcctttccc-tcgagttctacattgttccaccttctcgtatc 404  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||    
T  1668 tctcttgtgtctattacacaaacacccctagatcaattcattcattcatttcccttcgagttctacatcgttccaccttctcgtatc 1582  T

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Target: scaffold0604; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 1938 - 1840
Alignment:
Q  131 aatataaatgcgacacgtagctctattttgtcttttagcaacggccaaaatttcaacccatttcttgtttttaccccttt--cccttcagtaaaatggc 227  Q
    |||||| ||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||| |  ||||||| ||||  || ||||||||||||||    
T  1938 aatatacatgcgacacgtggcactattttgtctttttgcaacggtcaaaatttcaacccatttcgtccttttacctctttaccctttcagtaaaatggc 1840  T

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Target: scaffold0604; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 1824 - 1774
Alignment:
Q  253 tattacacaaacacccctggatcaatttctctctcgtgggtcagtttaaaaaa 305  Q
    ||||||| |||||||||||  |||||||||||||||| |||||||||||||||    
T  1824 tattacataaacacccctg--tcaatttctctctcgtaggtcagtttaaaaaa 1774  T

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