View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_29 (Length: 416)
Name: NF12023_low_29
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 14739390 - 14739030
Alignment:
| Q |
11 |
cagagacaagcatgagttcatattttttagggatggtgtctgaaacataccaacaacccccc-tcnnnnnnn-aaatggtgtataaaccgaccgccaaca |
108 |
Q |
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| T |
14739390 |
cagagacaagcatgagctcatcttttttagcgatggtgtctgaaacgtaccaacaaccccccctcttttttttaaatggtgtataaaccgaccgccaaca |
14739291 |
T |
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| Q |
109 |
cagacgggt-catggaccaactgcccctgcaaaaaacagcaagcatcatggcac----------aacaaactctcaccgcaacgaacaactgcaaatagt |
197 |
Q |
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| T |
14739290 |
cagacgggttcatggaccaactgcccctgcaaaaaacagcaagcatcatggccctttcgagcgcaacaaactctcaccgcaacgaacagctgcaaatagt |
14739191 |
T |
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| Q |
198 |
cttagcaagaacaaaatcagtggaacgatgacagatctcaccccaaaagccacgaaagctgcagatctcaacagatctgaacaaatcagaaatcagacaa |
297 |
Q |
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| T |
14739190 |
cttagcaagaacaaaaccagtggaacgatgacag----caccccaaaagccacgaaagctgcatatctcaacagatctgaacaaatcagaaatcaggtaa |
14739095 |
T |
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| Q |
298 |
gcaatcaccaaaccaaagttttagggaccttagttttagtgttacactccaaaatgattattaat |
362 |
Q |
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| T |
14739094 |
gcaatcaccaaaccaaagttttagggaccttagttttagtgttacactcaaaaatgattattaat |
14739030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 14739010 - 14738942
Alignment:
| Q |
348 |
aaaatgattattaataagagtgtttcattagttacacattcttattaaccattatagctcccaacaaac |
416 |
Q |
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| T |
14739010 |
aaaatgattattaataagagtgtttcattagctacacattcataataaccattatagtgcccaacaaac |
14738942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 14745006 - 14744933
Alignment:
| Q |
321 |
gggaccttagttttagtgttacactcc------aaaatgattattaataagagtgtttcattagttacacattc |
388 |
Q |
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| T |
14745006 |
gggaccttagttttagtgttacacttacactagaaaatgattattaataagagtgtttcattagctacacattc |
14744933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 11853990 - 11853777
Alignment:
| Q |
89 |
gtataaaccgaccgccaacacagacgggt-catggaccaactgcccctgcaa--aaaacagcaagcatcatggc----------acaacaaactctcacc |
175 |
Q |
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| T |
11853990 |
gtatgaaccgaccgtcaacacagacaggttcatggaccaactgcccctgcaacaaaaacagcaagcatcatggccctttcgagcacaacaaattatgacc |
11853891 |
T |
|
| Q |
176 |
gcaacgaacaactgcaaatagtcttagcaagaacaaaatcagtggaacgatgacagatctcaccccaaaagccacgaaagctgcagatctcaacagatct |
275 |
Q |
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| T |
11853890 |
gtaaagaacagctgcgacgagtcttggtaacaacaaaatcagtggaacggtgatag----caacccaaattccacgaaagctgcagatctcaacagatct |
11853795 |
T |
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| Q |
276 |
gaacaaatcagaaatcag |
293 |
Q |
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| T |
11853794 |
gtacaaattagaaatcag |
11853777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 38191030 - 38190944
Alignment:
| Q |
199 |
ttagcaagaacaaaatcagtggaacgatgacagatctcaccccaaaagccacgaaagctgcagatctcaacagatctgaacaaatcagaaa |
289 |
Q |
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| T |
38191030 |
ttagcaacaacaaaaccagtagaacggtgacag----cagcccaaattccacgaaagctgtaaatctcaacagatatggacaaatcagaaa |
38190944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 38191123 - 38191079
Alignment:
| Q |
117 |
tcatggaccaactgcccctgcaa--aaaacagcaagcatcatggc |
159 |
Q |
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| T |
38191123 |
tcatggaccaactgtccctgcaacaaaaacagcaagcatcatggc |
38191079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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