View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_30 (Length: 407)

Name: NF12023_low_30
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_30
NF12023_low_30
[»] chr5 (12 HSPs)
chr5 (10-358)||(24867524-24867868)
chr5 (43-175)||(26331907-26332039)
chr5 (56-175)||(40680507-40680625)
chr5 (43-144)||(26331565-26331666)
chr5 (38-176)||(42220944-42221082)
chr5 (43-175)||(40600379-40600511)
chr5 (44-175)||(11470348-11470481)
chr5 (44-173)||(42269301-42269430)
chr5 (44-176)||(12155739-12155872)
chr5 (38-175)||(34574627-34574764)
chr5 (99-172)||(1377543-1377616)
chr5 (74-175)||(30248160-30248260)
[»] chr6 (10 HSPs)
chr6 (19-175)||(10670463-10670618)
chr6 (56-178)||(31026771-31026895)
chr6 (55-176)||(78405-78526)
chr6 (118-176)||(9566469-9566527)
chr6 (43-175)||(11366388-11366517)
chr6 (41-176)||(32748026-32748161)
chr6 (56-176)||(10772383-10772498)
chr6 (43-166)||(30844920-30845043)
chr6 (46-88)||(24350727-24350769)
chr6 (118-175)||(32018602-32018659)
[»] chr3 (6 HSPs)
chr3 (39-175)||(46743371-46743507)
chr3 (42-176)||(52991786-52991920)
chr3 (40-174)||(31625481-31625616)
chr3 (38-175)||(3460922-3461059)
chr3 (44-176)||(52984831-52984964)
chr3 (92-176)||(54594301-54594381)
[»] chr1 (14 HSPs)
chr1 (39-175)||(47896349-47896485)
chr1 (38-175)||(10494319-10494456)
chr1 (43-175)||(29099063-29099193)
chr1 (56-176)||(15495507-15495627)
chr1 (39-175)||(25537235-25537372)
chr1 (38-176)||(14351715-14351854)
chr1 (87-176)||(26842700-26842787)
chr1 (43-175)||(8038864-8038995)
chr1 (39-175)||(27787225-27787360)
chr1 (39-175)||(2077918-2078054)
chr1 (41-168)||(11814179-11814306)
chr1 (83-176)||(4654197-4654290)
chr1 (84-176)||(40581081-40581172)
chr1 (130-175)||(10494262-10494307)
[»] chr7 (11 HSPs)
chr7 (45-172)||(21591027-21591152)
chr7 (44-176)||(43048188-43048320)
chr7 (38-176)||(31038619-31038757)
chr7 (94-176)||(10365417-10365499)
chr7 (43-175)||(32978745-32978874)
chr7 (39-175)||(34293892-34294025)
chr7 (44-168)||(24717545-24717669)
chr7 (99-170)||(21321530-21321601)
chr7 (118-176)||(25970010-25970068)
chr7 (56-116)||(7437048-7437108)
chr7 (119-175)||(47718826-47718882)
[»] scaffold0083 (1 HSPs)
scaffold0083 (41-168)||(2672-2799)
[»] chr8 (7 HSPs)
chr8 (39-176)||(15050522-15050659)
chr8 (39-176)||(38498865-38498999)
chr8 (50-175)||(10181587-10181710)
chr8 (46-176)||(5514802-5514932)
chr8 (38-176)||(25142523-25142661)
chr8 (101-176)||(6443322-6443397)
chr8 (98-175)||(39582135-39582211)
[»] chr2 (12 HSPs)
chr2 (39-176)||(40899749-40899886)
chr2 (56-176)||(6705140-6705259)
chr2 (43-175)||(27888299-27888430)
chr2 (39-158)||(9910115-9910234)
chr2 (38-176)||(38531893-38532033)
chr2 (38-176)||(14951372-14951511)
chr2 (47-175)||(1532826-1532952)
chr2 (38-175)||(33543927-33544060)
chr2 (38-175)||(28165388-28165525)
chr2 (44-175)||(6186802-6186933)
chr2 (286-386)||(45413853-45413952)
chr2 (254-282)||(45414120-45414148)
[»] chr4 (11 HSPs)
chr4 (39-176)||(12130140-12130277)
chr4 (43-172)||(45872652-45872781)
chr4 (39-175)||(56092788-56092924)
chr4 (46-175)||(14440735-14440864)
chr4 (44-175)||(42678089-42678218)
chr4 (38-173)||(52635137-52635273)
chr4 (44-168)||(55728146-55728271)
chr4 (38-176)||(19676137-19676275)
chr4 (99-176)||(19676903-19676980)
chr4 (36-111)||(44496494-44496567)
chr4 (118-176)||(52721860-52721918)
[»] scaffold0974 (1 HSPs)
scaffold0974 (48-176)||(2903-3031)
[»] scaffold0005 (1 HSPs)
scaffold0005 (98-175)||(269590-269667)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 24867524 - 24867868
Alignment:
Q  10 gcataggagggtgtttttggtttgtttatatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |    
T  24867524 gcataggagggtgtttttggtttgtttatatgggtgtttgtttggatgttccgcatatacacgacacattttttctttgtacgctgctttttaagtcttc 24867623  T
Q  110 taacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttcgagnnnnnnnnttaagtaatattttcatccttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |         |||||||| |||||||||||||    
T  24867624 taacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttc--aaaaaaaaaaaattaagtaacattttcatccttt 24867721  T
Q  210 atcnnnnnnnnnngtctcattttcgtcttatatttcttttaaacattacacaattaacctttaagtgaattatgataaaagaaaaactacagatatcttc 309  Q
    ||            ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||    
T  24867722 at--ttctttttcttctcattttcgtcttatatttttttaaaacattacacaattaacctttaagtgaattatgacaaaagaaaaactgcagatattttc 24867819  T
Q  310 tttcatcttcttcctcctccattttaaatagcaagaacctgtaacataa 358  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  24867820 tttgatcttcttcctcctccattttaaatagcaagaacctgcaacataa 24867868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 26331907 - 26332039
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||| |||||    
T  26331907 gtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattct 26332006  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
     | ||||||||||||||||||||||||||||||    
T  26332007 atttgttttaaataaatttcattttaacttctt 26332039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 40680625 - 40680507
Alignment:
Q  56 tgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaat 155  Q
    ||||||||||||| ||| |||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| | |||| |||||||||||    
T  40680625 tgttccgcatatatacggcacacttttcctttgtatgttgctttttaagtctcttaacctagcattccttgtgcttgctag-aatcttagtgttttaaat 40680527  T
Q  156 aaatttcattttaacttctt 175  Q
    ||||||||||||| ||||||    
T  40680526 aaatttcattttaccttctt 40680507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 26331565 - 26331666
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||| |||||    
T  26331565 gtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattct 26331664  T
Q  143 tt 144  Q
    ||    
T  26331665 tt 26331666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 42221082 - 42220944
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| ||||||||||   ||||||||||| | | |  |||||||||||||||| |||||| ||||||||||||| |||| | ||||| ||||| |||||     
T  42221082 tatgagtgtttgttttagtgttccgcatacatatggtacatttttcctttgtatgttgctatttaagtctcctagcctagccttcctcgtgctagctagg 42220983  T
Q  138 attctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||||||| ||||| ||| |||||||||||| |||||||    
T  42220982 attctttgcgttttgaattaatttcattttagcttcttc 42220944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 40600379 - 40600511
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||| |||||| |||||||||  |||| ||||||||||||  || ||  ||||||||||||||| | |||||||| || ||||||| |||||    
T  40600379 gtgtttgtttgggtgttccacatatacacaccacacttttcctttgtatattcctacttaagtctcctaaccaaacattccttatgtttgctaggattct 40600478  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
    ||| ||||| |||||| || |||||| ||||||    
T  40600479 ttgcgttttgaataaactttattttagcttctt 40600511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 11470481 - 11470348
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctagta-ttc 141  Q
    ||||||||| |||| || | ||||| |||||||| |||||||||||| |||||| ||||||| |||||| | || |||| ||| |||| | | | | ||     
T  11470481 tgtttgtttagatgctctgtatatatacgacacacttttcctttgtatgttgctattttaagactcctagcttagcatttcttatgctcgttggaatttt 11470382  T
Q  142 tttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||||||||||||||||||||||| ||||||    
T  11470381 tttgtgttttaaataaatttcattttagcttctt 11470348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 42269301 - 42269430
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctt 143  Q
    ||||||||||  ||||||||||||| || ||||| |||| || |||| ||| ||  |||||||||||| |  | |||||||| |||||||||  ||||||    
T  42269301 tgtttgtttgagtgttccgcatatatacaacacactttttctctgtatgttcctacttaagtctcctagctaagcattccttatgcttgctaagattctt 42269400  T
Q  144 tgtgttttaaataaatttcattttaacttc 173  Q
    || ||||| |||||| ||||||||| ||||    
T  42269401 tgcgttttgaataaacttcattttagcttc 42269430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 12155872 - 12155739
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctt-tttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    ||||||||||  ||||||||||| | ||| | || |||| ||||||| ||||||  ||||||  |||||  ||| ||||||||||| | ||||| |||||    
T  12155872 tgtttgtttgagtgttccgcatacatacggcgcactttttctttgtatgttgctactttaagattcctagtctagcattccttgtgatcgctaggattct 12155773  T
Q  143 ttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||  |||| |||||||||||||||| |||||||    
T  12155772 ttgcattttgaataaatttcattttagcttcttc 12155739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 34574627 - 34574764
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| ||||||| |||  |||||||  |||| |||||||| |||| ||||||| |||||| ||||||| |||||  ||| |||| || ||||| | |||     
T  34574627 tatgagtgtttgcttgagtgttccgtgtatatacgacacactttttctttgtatgttgctatttaagtatcctagtctagcattactcgtgctagatagg 34574726  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||  ||||| | ||||||| |||||||||||||    
T  34574727 attctttacgttttgagtaaattttattttaacttctt 34574764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 1377616 - 1377543
Alignment:
Q  99 tttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaactt 172  Q
    |||||| ||||||||||| ||||||||||||| | ||  |||  ||| | ||| ||||||||||||||||||||    
T  1377616 tttaagactcctaacctaacattccttgtgctggttaagattaattgcgatttgaataaatttcattttaactt 1377543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 30248260 - 30248160
Alignment:
Q  74 cacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttc 173  Q
    |||| |||| ||||||| |||||| |||||||||| || | ||  ||| || ||||| | ||| |||||||| ||||| || ||||||||||||||||||    
T  30248260 cacactttttctttgtatgttgctatttaagtctcatagcttagtatttctcgtgctagttaggattctttgcgttttgaa-aaatttcattttaacttc 30248162  T
Q  174 tt 175  Q
    ||    
T  30248161 tt 30248160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 10670463 - 10670618
Alignment:
Q  19 ggtgtttttggtttgtttatatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatc 118  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| | |||||||||||| |||| ||||||||||||||||| || |    
T  10670463 ggtgtttttggtttgtctatatgggtgtttgtttggatgttctgcatatatacgacaaacttttcctttgtatgttgttttttaagtctcctaacttagc 10670562  T
Q  119 attccttgtgcttgctagtattctttgtgttttaaataaattt-cattttaacttctt 175  Q
    ||| |||||||||  ||| ||||  || ||||||||||||||| ||||||||||||||    
T  10670563 attacttgtgcttattagaattc--tgggttttaaataaatttccattttaacttctt 10670618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 31026771 - 31026895
Alignment:
Q  56 tgttccgcatatacacgacacatttttcctttgtac--gttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaa 153  Q
    ||||| ||||||| ||| |||| ||||||||||||   |||||||||||||||| ||| |||| |||| ||| |||||||||| |||||| |||||||||    
T  31026771 tgttctgcatatatacggcacacttttcctttgtaaatgttgctttttaagtcttctagcctaacatttcttatgcttgctaggattcttagtgttttaa 31026870  T
Q  154 ataaatttcattttaacttcttcga 178  Q
    |||||||||||||||||||||||||    
T  31026871 ataaatttcattttaacttcttcga 31026895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 78526 - 78405
Alignment:
Q  55 atgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaa 154  Q
    |||||||||||||| ||| | || |||||||||||| ||| || ||||||||||||| || | |||| |||||||||||||| |||||||| ||||| ||    
T  78526 atgttccgcatatatacggctcacttttcctttgtatgttcctatttaagtctcctagccaagcatttcttgtgcttgctaggattctttgcgttttgaa 78427  T
Q  155 taaatttcattttaacttcttc 176  Q
    |||| ||||||||| |||||||    
T  78426 taaacttcattttagcttcttc 78405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 9566527 - 9566469
Alignment:
Q  118 cattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9566527 cattccttgtgcttgctaggattctttgtgttttaaataaatttcattttaacttcttc 9566469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 11366517 - 11366388
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||| ||||||||||||| |||  ||| |||||||||||| |||||| |||||||||  ||   || |||||||| |||||||||  |||||    
T  11366517 gtgtttgtttgggtgttccgcatatatacgg-acacttttcctttgtatgttgctctttaagtcttttaggttagcattccttatgcttgctaaaattct 11366419  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
      |||||||||||||||||||||||||||||||    
T  11366418 --gtgttttaaataaatttcattttaacttctt 11366388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 32748026 - 32748161
Alignment:
Q  41 gggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtatt 140  Q
    |||||||||||||  |||||||  |||||||| |||| | |||||||||| |||||| ||||||| || || |||| ||||||||||||| | ||  |||    
T  32748026 gggtgtttgtttgagtgttccgtgtatacacggcacactattcctttgtatgttgctatttaagtatcttagcctagcattccttgtgctagatatgatt 32748125  T
Q  141 ctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||   |||| ||||||||||||||||||||||||    
T  32748126 ctttacattttgaataaatttcattttaacttcttc 32748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 10772498 - 10772383
Alignment:
Q  56 tgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaat 155  Q
    ||||||||||||| ||| |||| |||||||||||||||| ||     ||||||||| || | |||||||||||||||| || ||  |||| ||||| |||    
T  10772498 tgttccgcatatatacggcacacttttcctttgtacgttcct-----agtctcctagccaagcattccttgtgcttgcaaggatattttgcgttttgaat 10772404  T
Q  156 aaatttcattttaacttcttc 176  Q
     || |||||||||||||||||    
T  10772403 taacttcattttaacttcttc 10772383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 30845043 - 30844920
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||| ||||  |||||| |||||| |||| | ||||||||||| || |||||| ||||| ||| |||   || ||||||||||||||| ||  |||||    
T  30845043 gtgtttatttgattgttccacatatatacgatatatttttcctttatatgttgctatttaaatcttctattgtagcattccttgtgcttgttaagattct 30844944  T
Q  143 ttgtgttttaaataaatttcattt 166  Q
    |||  |||| ||||||||||||||    
T  30844943 ttgcattttgaataaatttcattt 30844920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 24350727 - 24350769
Alignment:
Q  46 tttgtttggatgttccgcatatacacgacacatttttcctttg 88  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||    
T  24350727 tttgtttgggtgttccgcatatacacggcacacttttcctttg 24350769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 32018602 - 32018659
Alignment:
Q  118 cattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||| |||||||| | ||| |||| ||||| ||| |||||||||||||||||||||||    
T  32018602 catttcttgtgctggttaggattcattgtgattttaataaatttcattttaacttctt 32018659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 46743371 - 46743507
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    ||||||| |||||||||||||||||| ||| |||| ||| ||||  |||||| |||||| ||||| ||||||||| || ||||||||||||||||||| |    
T  46743371 atgggtgattgtttggatgttccgcacatatacgaaacactttttgtttgtatgttgctctttaaatctcctaacttagcattccttgtgcttgctagga 46743470  T
Q  139 ttctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||||||||||||||||||||||||| ||||||    
T  46743471 ttctttgtgttttaaataaatttcattttaccttctt 46743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 52991786 - 52991920
Alignment:
Q  42 ggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattc 141  Q
    ||||||||||||  | ||||| ||||| |||||||| ||||| | |||| |||| |||||||||||||||||||| |||| |||||| ||||||| ||||    
T  52991786 ggtgtttgtttgtgtattccgtatatatacgacacaattttcatgtgtatgttgttttttaagtctcctaacctagcatttcttgtgtttgctaggattc 52991885  T
Q  142 tttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||||||||||||||||| |||||||    
T  52991886 tttgtgttttaaataaatttcattttagcttcttc 52991920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 31625616 - 31625481
Alignment:
Q  40 tgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    ||||||||||||||| |||||| |||||| |||||||| |||||||||||| |||||| | ||||  ||||||  |||  |||||||||||| ||||  |    
T  31625616 tgggtgtttgtttgggtgttccacatatatacgacacacttttcctttgtatgttgctatattaaaactcctagtctagtattccttgtgctcgctatga 31625517  T
Q  139 ttctttgtgttttaaataaatttcattttaacttct 174  Q
    ||||||| ||||| ||||||||||||||||||||||    
T  31625516 ttctttgcgttttgaataaatttcattttaacttct 31625481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 3460922 - 3461059
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||||||||||||||   |||||||| |||| |||  ||| |||||||||||| |||||| ||||||||| ||| |||| ||||||| ||||| | |||     
T  3460922 tatgggtgtttgtttcagtgttccgcgtatatacggtacacttttcctttgtatgttgctatttaagtcttctagcctagcattcctcgtgctagttagg 3461021  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||  ||||| |||||||||||||||||||||||    
T  3461022 attctttacgttttgaataaatttcattttaacttctt 3461059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 52984831 - 52984964
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    ||||||||||| |||| ||||||||||||||||| |||| ||||||| |||| |  ||||||  |||||| ||| |||||||| |||| | ||  |||||    
T  52984831 tgtttgtttgggtgtttcgcatatacacgacacactttttctttgtatgttgttactttaagattcctaatctagcattccttatgctcgttaaaattct 52984930  T
Q  143 ttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||  ||||| ||||||||||||||||||||||||    
T  52984931 ttacgttttgaataaatttcattttaacttcttc 52984964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 54594301 - 54594381
Alignment:
Q  92 gttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||||||||||  ||| |||||||| | |||||||| |||||||  |||    ||||||| |||||||||||||||    
T  54594301 gttgctttttaagtctcctagtctagcattccttattcttgctaggattctttacgtt----ataaattccattttaacttcttc 54594381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 47896485 - 47896349
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||| |||||| |||||||||| ||||| || |||||||| ||||||||||     
T  47896485 atgggtgtttgtttggatgttccgcatatatacgg-acactttttctttgtatgttgctcttttaagtcttctaacttaacattccttatgcttgctagg 47896387  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  47896386 attctttgtattttaaataaatttcattttaacttctt 47896349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 10494456 - 10494319
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| |||||||||||| ||||| ||||||| || ||||| |||||||||||| |||||| ||||||||||||| ||   |||||||||||||||||||     
T  10494456 tatgagtgtttgtttgggtgttctgcatatatacaacacacttttcctttgtatgttgctatttaagtctcctagccagacattccttgtgcttgctagg 10494357  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||| ||||| |||||||||||||||| ||||||    
T  10494356 attctttgcgttttgaataaatttcattttagcttctt 10494319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 29099193 - 29099063
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    ||||||||||  |||||||||||||| ||| |||| |||   | |||| |||| ||||||||||||||| |||| | ||||||||||||||||| |||||    
T  29099193 gtgtttgtttatatgttccgcatatatacggcacactttg--tgtgtatgttgttttttaagtctcctagcctagcgttccttgtgcttgctaggattct 29099096  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||||||||||||||||||||||||||||    
T  29099095 ttgtgttttaaataaatttcattttaacttctt 29099063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 15495627 - 15495507
Alignment:
Q  56 tgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaat 155  Q
    ||||||||||||| | | |||| |||||||||||| |||||||||||||||||||| |||| |||| ||||||| |||||  |||||| |||||||||||    
T  15495627 tgttccgcatatataaggcacacttttcctttgtatgttgctttttaagtctcctagcctagcatttcttgtgcatgctatgattcttagtgttttaaat 15495528  T
Q  156 aaatttcattttaacttcttc 176  Q
    ||||||||||||| |||||||    
T  15495527 aaatttcattttagcttcttc 15495507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 25537372 - 25537235
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgcttttt-aagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||||||||||||||  ||||||||||||| |||||||| ||||||| |||| |||| ||||| |||||||||| |||| ||||| |||||||||||||     
T  25537372 atgggtgtttgtttgtgtgttccgcatatatacgacacacttttcctgtgtatgttgtttttttaagtctcctagcctagcattctttgtgcttgctagg 25537273  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||||  | |||||||||| |||||||| ||||||    
T  25537272 attctttgcatgttaaataaatatcattttagcttctt 25537235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 14351715 - 14351854
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctag 136  Q
    ||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||  ||||||  |||||  ||| ||||||||||||| |||||    
T  14351715 tatggttgtttgtttgggtgttccgcatatatacgacacacttttcctttgtatgttgctactttaagattcctagtctagcattccttgtgctcgctag 14351814  T
Q  137 tattctttgtgttttaaataaatttcattttaacttcttc 176  Q
     ||||||||  |||| |||||||||||||||| |||||||    
T  14351815 gattctttgcattttgaataaatttcattttagcttcttc 14351854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 26842787 - 26842700
Alignment:
Q  87 tgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||||||    
T  26842787 tgtatgttgctttttaagtctcctaacctagcattccttgtgcttgctaggattc--tgtgttttaaataaatttcattttagcttcttc 26842700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 8038995 - 8038864
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||| ||||||||||||| || | ||| ||||||||| || | || | ||||||||| ||| | || ||||||||||||||||||| ||| |    
T  8038995 gtgtttgtttgggtgttccgcatatatac-atacacttttcctttatatggtgttctttaagtcttctagcttagcattccttgtgcttgctaggatttt 8038897  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  8038896 ttgtgttttaaataaatttcattttagcttctt 8038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 27787225 - 27787360
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||| ||||||||||| ||||||||||||| | |  ||| ||||| |||||| |||| | ||||||||||||| | || ||||||||||||||||||  |    
T  27787225 atggctgtttgtttgggtgttccgcatatatatgg-acacttttcgtttgtatgttgttctttaagtctcctagcttagcattccttgtgcttgctaaga 27787323  T
Q  139 ttctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  27787324 ttctttgtgctttaaataaatttcattttagcttctt 27787360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 2077918 - 2078054
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||||||||||||||| | ||||||||||| |||||||| |||||||||| | ||| ||  |||||||||||| || | |||||||| || ||||||| |    
T  2077918 atgggtgtttgtttgggttttccgcatatatacgacacagttttcctttgcatgttcctacttaagtctcctagccaagcattccttatgtttgctagga 2078017  T
Q  139 ttctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||  |||| |||||| ||||||||| ||||||    
T  2078018 ttctttgcattttgaataaacttcattttaccttctt 2078054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 11814306 - 11814179
Alignment:
Q  41 gggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtatt 140  Q
    |||||||||||||| |||| |||||||| | | |||| | |||||||||| |||||| ||||||||||||| || | | |||||| |||||| ||| |||    
T  11814306 gggtgtttgtttgggtgtttcgcatatataaggcacaatgttcctttgtatgttgctatttaagtctcctagccaagctttccttctgcttgttaggatt 11814207  T
Q  141 ctttgtgttttaaataaatttcatttta 168  Q
    ||||| ||||| ||||||||||||||||    
T  11814206 ctttgcgttttgaataaatttcatttta 11814179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 4654197 - 4654290
Alignment:
Q  83 cctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||||||| |||||| ||||||||| ||| | || |||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  4654197 cctttgtatgttgctctttaagtcttctagcttagcattccctgtgcttgctaggattctttgtgttttaaataattttcattttagcttcttc 4654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 40581081 - 40581172
Alignment:
Q  84 ctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||| ||||||||| |||||| ||| | || ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  40581081 ctttgtatgttgctttt-aagtcttctagcttagcattccttgtgcttgctaagattctttgtgttttaaataaatttcattttagcttcttc 40581172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 10494307 - 10494262
Alignment:
Q  130 ttgctagtattctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  10494307 ttgctagaattctttgtgttttgaataaatttcattttaccttctt 10494262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 21591027 - 21591152
Alignment:
Q  45 gtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattcttt 144  Q
    |||||||||| ||||| ||||||| |||||||| |||||  ||||| |||  ||||||||||||||||| || ||||||||||||||||||| |||||||    
T  21591027 gtttgtttgggtgttctgcatatatacgacacacttttctcttgtatgtt--tttttaagtctcctaacttagcattccttgtgcttgctagaattcttt 21591124  T
Q  145 gtgttttaaataaatttcattttaactt 172  Q
    ||||||||||||||||||||||||||||    
T  21591125 gtgttttaaataaatttcattttaactt 21591152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 43048188 - 43048320
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctt 143  Q
    ||||||||||  |||||  |||||| ||||||||||||||||||||| ||| ||  ||||||||||||||| | ||||||||||| ||| ||| ||||||    
T  43048188 tgtttgtttgagtgttctacatatatacgacacatttttcctttgtatgttcctacttaagtctcctaaccaagcattccttgtgtttgttaggattctt 43048287  T
Q  144 tgtgttttaaataaatttcattttaacttcttc 176  Q
    | | |||| |||||| |||||||||||||||||    
T  43048288 tatattttgaataaacttcattttaacttcttc 43048320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 31038757 - 31038619
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| |||||||||||  |||||||  |||| |||||||| |||||||||||| |||||| ||||||| || || |||| ||||||||||||| | ||      
T  31038757 tatgagtgtttgtttgagtgttccgtgtatatacgacacacttttcctttgtatgttgctatttaagtatcttagcctagcattccttgtgctagataag 31038658  T
Q  138 attctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||||||  |||||||||||||||||||||| |||||||    
T  31038657 attctttacgttttaaataaatttcattttagcttcttc 31038619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 10365499 - 10365417
Alignment:
Q  94 tgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||| ||||||||| ||| | || ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  10365499 tgctctttaagtcttctagcttagcattctttgtgcttgctaggattctttgtgttttaaataaatttcattttagcttcttc 10365417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 32978874 - 32978745
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    ||||||||||||||| |||||||||| || | ||| ||||| ||| || ||| || |||||||||| || | ||  ||||||| |||||||||| |||||    
T  32978874 gtgtttgtttggatgatccgcatataaac-agacacttttcttttatatgttactctttaagtctcatagcttaatattccttatgcttgctaggattct 32978776  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
      ||||||||| |||||||||||||||||||||    
T  32978775 --gtgttttaattaaatttcattttaacttctt 32978745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 34293892 - 34294025
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||||||||||||||  | ||||||||||| |||  ||| |||||||||||| | |||| ||| ||||| ||| | || ||||  ||||||||||||| |    
T  34293892 atgggtgtttgtttgagtattccgcatatatacgg-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctagga 34293990  T
Q  139 ttctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||  |||||||||||||||||||||||| ||||||    
T  34293991 ttct--gtgttttaaataaatttcattttagcttctt 34294025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 24717669 - 24717545
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctt 143  Q
    ||||||||||| ||||||||||||| ||  |||| |||| |||||||  || ||  ||||||||| || |  | ||||||||||||||||||  ||||||    
T  24717669 tgtttgtttgggtgttccgcatatatacatcacactttttctttgtatcttcctacttaagtctcatagctaagcattccttgtgcttgctaagattctt 24717570  T
Q  144 tgtgttttaaataaatttcatttta 168  Q
    || ||||| |||||| |||||||||    
T  24717569 tgcgttttgaataaacttcatttta 24717545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 21321530 - 21321601
Alignment:
Q  99 tttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaac 170  Q
    |||||| ||| |||||||||| |||||||||| | ||| |||| ||||||||| ||||||||||||||||||    
T  21321530 tttaagactcttaacctatcactccttgtgctaggtaggattcattgtgtttttaataaatttcattttaac 21321601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 25970010 - 25970068
Alignment:
Q  118 cattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||| | ||| |||  ||||| ||| ||||||||||||||||||||||||    
T  25970010 cattccttgtgctggttaggattaattgtgattttaataaatttcattttaacttcttc 25970068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 7437108 - 7437048
Alignment:
Q  56 tgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaaccta 116  Q
    ||||||||||||| |||  ||| |||| ||||||| |||||| ||||||||||||| ||||    
T  7437108 tgttccgcatatatacggtacactttttctttgtatgttgctatttaagtctcctagccta 7437048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 47718882 - 47718826
Alignment:
Q  119 attccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||||||| | ||| |||| ||||| ||| |||||||||||||||| ||||||    
T  47718882 attccttgtgctggttaggattcattgtgattttaataaatttcattttagcttctt 47718826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 2799 - 2672
Alignment:
Q  41 gggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtatt 140  Q
    |||| ||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||||||||||  ||| ||||||||||||||||||| |||    
T  2799 gggtctttgtttggatgttccgcatatatacggcacacttttcctttgtatgttgcttgttaagtctcctagtctagcattccttgtgcttgctaggatt 2700  T
Q  141 ctttgtgttttaaataaatttcatttta 168  Q
    ||||| ||||| ||||| ||||||||||    
T  2699 ctttgcgttttgaataagtttcatttta 2672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 15050522 - 15050659
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||||||||||||||  ||||||||||||| ||| |||| ||||||| |||| |||| ||||||| ||||||| |||| ||||||||||||||||||| |    
T  15050522 atgggtgtttgtttgtgtgttccgcatatatacggcacacttttcctgtgtatgttgttttttaattctcctagcctagcattccttgtgcttgctagaa 15050621  T
Q  139 ttctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||||||  | ||||||||||||||||||| |||||||    
T  15050622 ttctttgcatgttaaataaatttcattttagcttcttc 15050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 38498999 - 38498865
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||||||||||||||| |||||||||||| |  |||||  |||||||||||| |||||| |||||||||  |  | || |||||| |||||||||||| |    
T  38498999 atgggtgtttgtttgggtgttccgcatatgcg-gacac--ttttcctttgtatgttgctctttaagtcttatggcttaacattccctgtgcttgctagga 38498903  T
Q  139 ttctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38498902 ttctttgtgttttaaataaatttcattttaacttcttc 38498865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 10181710 - 10181587
Alignment:
Q  50 tttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgtt 149  Q
    ||||||||||||||||||| || | ||| || ||||||||| ||||||||| ||||||| || | || |||| ||| | |||| ||| ||||||||||||    
T  10181710 tttggatgttccgcatatatac-agacacttctcctttgtatgttgctttt-aagtctcttagcttaacatttcttatacttgttaggattctttgtgtt 10181613  T
Q  150 ttaaataaatttcattttaacttctt 175  Q
    || |||||||||||||||| ||||||    
T  10181612 ttcaataaatttcattttagcttctt 10181587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 5514932 - 5514802
Alignment:
Q  46 tttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttg 145  Q
    ||||||||| ||||||||||||| |||||||| | || ||||||| ||| ||  ||||||||||||    | ||||| |||||||||||   ||||||||    
T  5514932 tttgtttgggtgttccgcatatatacgacacactctttctttgtatgttcctacttaagtctcctagttaagcattctttgtgcttgcttagattctttg 5514833  T
Q  146 tgttttaaataaatttcattttaacttcttc 176  Q
     ||||| |||||| ||||||||| |||||||    
T  5514832 cgttttgaataaacttcattttaccttcttc 5514802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 25142661 - 25142523
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| |||||||||||  |||||||   ||| |||||||| |||||||||||  |||| | ||||||| || ||  ||| |||||||| |||| | ||      
T  25142661 tatgagtgtttgtttgagtgttccgtggatatacgacacacttttcctttgtttgttgttatttaagtatcttagtctagcattccttatgctagataag 25142562  T
Q  138 attctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||| |||||| |||||||||||||||| |||||||    
T  25142561 attctttatgttttgaataaatttcattttagcttcttc 25142523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 6443397 - 6443322
Alignment:
Q  101 taagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||| |||||| |||| || |||||||||| | ||| |||| ||||| ||| |||||||||||||||| |||||||    
T  6443397 taagactcctagcctagcactccttgtgctggttaggattcattgtgattttaataaatttcattttagcttcttc 6443322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 39582135 - 39582211
Alignment:
Q  98 ttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||||||| || |||| ||||| ||||||||| ||| ||| | ||| |||||||||||||| |||||| ||||||    
T  39582135 ttttaagtctcatagcctagcattctttgtgcttgttaggattgtgtgt-ttttaaataaattttattttagcttctt 39582211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 40899886 - 40899749
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    ||||| |||||||||  ||||| ||||||| |||||||| |||||||||||| |||| ||||||||| || ||  ||| |||||||||||||||||||      
T  40899886 atgggggtttgtttgagtgttctgcatatatacgacacacttttcctttgtatgttgttttttaagtatcatagtctagcattccttgtgcttgctaggg 40899787  T
Q  139 ttctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40899786 ttctttgtgttttaaataaattttattttaacttcttc 40899749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 6705259 - 6705140
Alignment:
Q  56 tgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaat 155  Q
    ||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||| |||| |||||||| |||||||| | | |||| |||||||||||    
T  6705259 tgttccgcatatatacgacacacttttcctttgtatgttgttttttaagtctcctagcctagcattccttatgcttgctggga-tcttagtgttttaaat 6705161  T
Q  156 aaatttcattttaacttcttc 176  Q
    ||||||||||||| |||||||    
T  6705160 aaatttcattttagcttcttc 6705140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 27888430 - 27888299
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||| ||||||||||||| |||  ||| |||||||||||| |||||| ||||| |||||||   || ||||| ||||||||||||| |||||    
T  27888430 gtgtttgtttgggtgttccgcatatatacgg-acacttttcctttgtatgttgctctttaattctcctagtttagcattcgttgtgcttgctaggattct 27888332  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
    || |||||||||||||||||||||||| |||||    
T  27888331 ttatgttttaaataaatttcattttaatttctt 27888299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 9910234 - 9910115
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||  ||||||||| || || | ||||||||||||||||||  |    
T  9910234 atgggtgtttgtttggatgttccgcatatatacgacacacttttcctttgtatgttcctacttaagtctcatagccaaacattccttgtgcttgctacga 9910135  T
Q  139 ttctttgtgttttaaataaa 158  Q
    ||||||  ||||| ||||||    
T  9910134 ttctttacgttttgaataaa 9910115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 38531893 - 38532033
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctag 136  Q
    |||| |||||||||||||||||||| ||||| || ||||| |||| ||||||| ||||||  |||||| ||||||  ||| | ||||||||||| |||||    
T  38531893 tatgagtgtttgtttggatgttccgtatatatacaacacactttttctttgtatgttgctactttaagactcctagtctagcgttccttgtgctcgctag 38531992  T
Q  137 tattctttgtgttttaaataaa-tttcattttaacttcttc 176  Q
     ||| |||| ||||| |||||| ||||||||||||||||||    
T  38531993 gattatttgcgttttgaataaattttcattttaacttcttc 38532033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 14951372 - 14951511
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgc-tttttaagtctcctaacctatcattccttgtgcttgctag 136  Q
    ||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| |||||   ||||||  | |||  | | ||||||||||||| ||| |    
T  14951372 tatggttgtttgtttgggtgttccgcatatatacgacacacttttcctttgtatgttgcaactttaagatttctagtccagcattccttgtgctcgctgg 14951471  T
Q  137 tattctttgtgttttaaataaatttcattttaacttcttc 176  Q
     ||| |||| ||||| ||||||||||||||||||||||||    
T  14951472 gattgtttgcgttttgaataaatttcattttaacttcttc 14951511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 1532952 - 1532826
Alignment:
Q  47 ttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgt 146  Q
    |||||||||||||||||||||| |  | ||| ||||| |||||| |||||| ||||| ||||||||| ||  ||||||||| |||  ||| |||||||||    
T  1532952 ttgtttggatgttccgcatatatat-agacacttttcgtttgtatgttgctctttaaatctcctaacttag-attccttgtacttattaggattctttgt 1532855  T
Q  147 gttttaaataaatttcattttaacttctt 175  Q
    |||| ||||||||||||||||| ||||||    
T  1532854 gtttgaaataaatttcattttaccttctt 1532826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 33544060 - 33543927
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    ||||||||||||||||  |||||||| ||    ||||||| ||||| |||||| |||| | ||||||||||||||| ||  ||| ||  |||| | |||     
T  33544060 tatgggtgtttgtttgagtgttccgcgta----cgacacacttttcttttgtatgttgttatttaagtctcctaacttagtatttctcatgctagttagg 33543965  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  33543964 attctttctgttttgaataaatttcattttaacttctt 33543927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 28165388 - 28165525
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| |||||||||||  |||||||  |||| |||||||| ||||||||| || |||||| ||||||| || || |||| ||||||||||||| | ||      
T  28165388 tatgagtgtttgtttgagtgttccgtgtatatacgacacacttttcctttatatgttgctatttaagtatcttagcctagcattccttgtgctagataag 28165487  T
Q  138 attctttgtgttttaaataaatttcattttaacttctt 175  Q
    ||| |||  ||||| |||||||| ||||||| ||||||    
T  28165488 attatttacgttttgaataaattccattttatcttctt 28165525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 6186802 - 6186933
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctt-tttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    ||||||||||| || |||||||||| |  ||||| ||||| |||||| ||| ||  ||||||  |||||  ||| |||| |||||||| ||||| |||||    
T  6186802 tgtttgtttgggtgctccgcatatatat-acacacttttcatttgtatgtttctactttaagattcctagtctagcattgcttgtgctcgctaggattct 6186900  T
Q  143 ttgtgttttaaataaatttcattttaacttctt 175  Q
    |||  |||| |||||||||||||||| ||||||    
T  6186901 ttgcattttgaataaatttcattttagcttctt 6186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 386
Target Start/End: Complemental strand, 45413952 - 45413853
Alignment:
Q  286 aaaagaaaaactacagatatcttctttcatcttcttcctcctccattttaaatagcaagaacctgtaacataaaatcgaaactcgaatattccaatcaat 385  Q
    ||||||||| ||  || |||||||||  |||||||||||||||||| ||| | |||||  |||||||||| |||| | ||||||||| ||| ||||||||    
T  45413952 aaaagaaaagcttaagttatcttcttcaatcttcttcctcctccatgttatagagcaa-tacctgtaacaaaaaacccaaactcgaaaattgcaatcaat 45413854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 45414148 - 45414120
Alignment:
Q  254 attacacaattaacctttaagtgaattat 282  Q
    |||||||||||||||||||||||||||||    
T  45414148 attacacaattaacctttaagtgaattat 45414120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 12130277 - 12130140
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||||||||||||||| ||||||||||||| ||  |||| ||||| | |||| | |||||||||||||||||| |||| |||||||| ||| |||||| |    
T  12130277 atgggtgtttgtttgggtgttccgcatatatacatcacacttttcttctgtatgatgctttttaagtctcctagcctagcattccttctgcatgctagga 12130178  T
Q  139 ttctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||| |||||||||||| ||||||||||| |||||||    
T  12130177 ttcttagtgttttaaatagatttcattttagcttcttc 12130140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 45872781 - 45872652
Alignment:
Q  43 gtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||| ||||||||||||| |||  ||| |||| ||||||| |||| |||||||||||| || ||||  |||||||||||||||||| ||| |    
T  45872781 gtgtttgtttgggtgttccgcatatatacggaacactttttctttgtatgttgttttttaagtctcatagcctagtattccttgtgcttgctaggattat 45872682  T
Q  143 ttgtgttttaaataaatttcattttaactt 172  Q
     |||||||||||||||||||||||||||||    
T  45872681 atgtgttttaaataaatttcattttaactt 45872652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 56092788 - 56092924
Alignment:
Q  39 atgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagta 138  Q
    |||| ||||||||||  ||||||||||||| |||||||| ||||||| ||||  ||| ||||||| ||||||| |||| ||||||||||||||||||| |    
T  56092788 atggatgtttgtttgtgtgttccgcatatatacgacacacttttcctgtgtatattgttttttaattctcctagcctagcattccttgtgcttgctagga 56092887  T
Q  139 ttctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||  | ||||||||||||||||||| ||||||    
T  56092888 ttctttgcatgttaaataaatttcattttagcttctt 56092924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 14440864 - 14440735
Alignment:
Q  46 tttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttg 145  Q
    ||||||||| ||||||||||||| |||||| | |||||||| |||  ||| |||||||||||||||  ||| |||| |||||||||| ||| |||||| |    
T  14440864 tttgtttgggtgttccgcatatatacgacaaacttttccttagtatattgttttttaagtctcctagtctaacatttcttgtgcttgttaggattcttag 14440765  T
Q  146 tgttttaaataaatttcattttaacttctt 175  Q
    ||||||||||||||||||||||| ||||||    
T  14440764 tgttttaaataaatttcattttagcttctt 14440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 42678089 - 42678218
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctt 143  Q
    ||||||||||| |||||| |||||| |||| ||| ||||||||| || ||| |||||||||||||||| |||| |||| || ||||||||||| ||||      
T  42678089 tgtttgtttgggtgttccacatatatacgagacacttttcctttttatgttactttttaagtctcctagcctagcatttctcgtgcttgctaggattc-- 42678186  T
Q  144 tgtgttttaaataaatttcattttaacttctt 175  Q
    | ||||||||| ||||| ||||||||||||||    
T  42678187 tctgttttaaacaaattccattttaacttctt 42678218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 173
Target Start/End: Complemental strand, 52635273 - 52635137
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgct-ttttaagtctcctaacctatcattccttgtgcttgctag 136  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||| ||||||| |||  |  ||||||  | |||  ||| |||||||| |||| |||||    
T  52635273 tatggttgtttgtttgggtgttccgcatatacacgacacactttttctttgtatgttattactttaagatttctagtctagcattccttatgctcgctag 52635174  T
Q  137 tattctttgtgttttaaataaatttcattttaacttc 173  Q
      ||||||| ||||| |||||||||||||||||||||    
T  52635173 ggttctttgcgttttgaataaatttcattttaacttc 52635137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 55728271 - 55728146
Alignment:
Q  44 tgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctt-tttaagtctcctaacctatcattccttgtgcttgctagtattct 142  Q
    |||||||||||  ||||||||||||||||| |||  ||||||||||| ||||||  |||||   |||||| ||| ||||||| || || ||||| |||||    
T  55728271 tgtttgtttgggcgttccgcatatacacgatacacctttcctttgtatgttgctactttaatattcctaatctagcattcctcgtcctcgctaggattct 55728172  T
Q  143 ttgtgttttaaataaatttcatttta 168  Q
    ||| ||||| ||||||||||||||||    
T  55728171 ttgcgttttgaataaatttcatttta 55728146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 19676137 - 19676275
Alignment:
Q  38 tatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagt 137  Q
    |||| |||||||||||  |||||||  ||||  || |||| ||||  |||||| |||||| ||||||| |  || |||| ||||||||||||| | |||     
T  19676137 tatgagtgtttgtttgagtgttccgtgtatattcggcacactttttttttgtatgttgctatttaagtattttagcctaacattccttgtgctagatagg 19676236  T
Q  138 attctttgtgttttaaataaatttcattttaacttcttc 176  Q
    |||||||  ||||| ||| |||| |||||||||||||||    
T  19676237 attctttacgttttgaatcaattccattttaacttcttc 19676275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 19676903 - 19676980
Alignment:
Q  99 tttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||| || || |||| ||||||||||||| | ||| |||||||  ||||| |||||||| |||||||||||||||    
T  19676903 tttaagtatcttagcctaacattccttgtgctagataggattctttacgttttgaataaattccattttaacttcttc 19676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 44496567 - 44496494
Alignment:
Q  36 tatatgggtgtttgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctccta 111  Q
    ||||||||||| ||||||  |||||||| |||||  |||||| |||| ||||||| |||||| |||||||||||||    
T  44496567 tatatgggtgtctgtttgagtgttccgcgtatac--gacacactttttctttgtatgttgctatttaagtctccta 44496494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 52721860 - 52721918
Alignment:
Q  118 cattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttcttc 176  Q
    ||||||||||||| | ||| |||| ||||| ||| |||||||||||||||| |||||||    
T  52721860 cattccttgtgctggttaggattcattgtgattttaataaatttcattttagcttcttc 52721918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 2903 - 3031
Alignment:
Q  48 tgtttggatgttccgcatatacacgacacatttttcctttgtacgttgctttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtg 147  Q
    ||||||| |||||| |||||| |||||||| ||||| ||| || ||| ||  |||||||||||| || | ||||||||||||||||||| |||||||||     
T  2903 tgtttgggtgttccacatatatacgacacacttttcttttatatgttcctacttaagtctcctagccaaacattccttgtgcttgctaggattctttgtc 3002  T
Q  148 ttttaaataaatttcattttaacttcttc 176  Q
    |||||||||||  |||||||| |||||||    
T  3003 ttttaaataaacctcattttatcttcttc 3031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 269667 - 269590
Alignment:
Q  98 ttttaagtctcctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttctt 175  Q
    |||||||||| ||| | || |||| ||| |||||||||  ||||| || |||||||||||||||||||||||||||||    
T  269667 ttttaagtcttctagcttagcatttcttatgcttgctaaaattctctgagttttaaataaatttcattttaacttctt 269590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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