View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_31 (Length: 399)
Name: NF12023_low_31
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 25325576 - 25325205
Alignment:
| Q |
18 |
gatccaatgttgccattaattaattaatatgttgaatattttgtgtccttatttaatgtaagtaccaaatctacacgtagccatataatatacgtgacgt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25325576 |
gatccaatgttgccattagttaattaatatgttgaatattttgtgtccttatttaatgtaagtaccaaatctacacgtagccatata-----cgtgacgt |
25325482 |
T |
|
| Q |
118 |
gtttagtaagcttccaaagtgaaatcttgacatgtatattcttaaataacctgaactgaataaaataatgtatgtcatataagtttgattaacgcaatga |
217 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25325481 |
gtttagtaagcttccaaactggaatcttgacatgtatattcttaaataacctgaactgaataaaataatgtatgtcatataagtttgattaacgcaatga |
25325382 |
T |
|
| Q |
218 |
aaacagaagaaattaatatggctttgatcttgaaggtgtttgctttgaatg---------ttgcagtagtagtgttactagtaatcctcctccctagtgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| | || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
25325381 |
aaacagaagaaattaatatggctttgatcttgaaggtgttagcattgaaagaattactaaatgttgcagtagtgttactagtaatcctcctccctagtgc |
25325282 |
T |
|
| Q |
309 |
ttatggtttgagcagagatgaattcccttctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttctt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25325281 |
ttatggtttgagcagagatgaattcccttcttactttgtgtttggtgcttcaacttcagcttaccaagtttgttctt |
25325205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 25330640 - 25330531
Alignment:
| Q |
279 |
agtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttctgactttgtgtttggtgcttcaacttcagcttaccaagtt |
378 |
Q |
| |
|
||||||| |||||||||| || ||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25330640 |
agtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgaattcccttctgactttgtgtttggtgtatcaacttcagcttaccaagtt |
25330541 |
T |
|
| Q |
379 |
tgttcttctc |
388 |
Q |
| |
|
|||||||||| |
|
|
| T |
25330540 |
tgttcttctc |
25330531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 387
Target Start/End: Original strand, 9988451 - 9988548
Alignment:
| Q |
291 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcttct |
387 |
Q |
| |
|
||||||||| | | |||||||| |||||| || |||||| ||||||| | |||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
9988451 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccaactttgtgtttgttgtatcaacttcagcttaccaattttgttcttct |
9988548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 21725318 - 21725416
Alignment:
| Q |
291 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcttctc |
388 |
Q |
| |
|
||||||||| | | |||||||| |||||| || |||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21725318 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21725416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 21805043 - 21805141
Alignment:
| Q |
291 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcttctc |
388 |
Q |
| |
|
||||||||| | | |||||||| |||||| || |||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21805043 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21805141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 14331448 - 14331513
Alignment:
| Q |
324 |
agatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcttctc |
388 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14331448 |
agatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
14331513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University