View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_32 (Length: 393)
Name: NF12023_low_32
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 45945927 - 45945561
Alignment:
| Q |
19 |
caatcaccaccaccgccgtcaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatta |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45945927 |
caatcaccaccaccgccgtgaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatta |
45945828 |
T |
|
| Q |
119 |
catcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcccgaagaacatcgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45945827 |
catcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcctgaagaacatcgt |
45945728 |
T |
|
| Q |
219 |
aagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaaccaaaccgaatttgctatggcatattatgtcatcaatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45945727 |
aagatccttgtttcacaaggttgcattgttaaggagattgctcctgtgtaccctccagccaaccaaaccgaatttgctatggcatattatgtcatcaatt |
45945628 |
T |
|
| Q |
319 |
actccaaactacgtatctttgaggtacatgtctttgagtaaaatgtcttttttattatatctctgct |
385 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45945627 |
actccaaactacgtatcttcgaggtacatgtctttgagtaaaatgtcttttttattatatctttgct |
45945561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 334
Target Start/End: Original strand, 55221333 - 55221583
Alignment:
| Q |
84 |
gcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttg |
183 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||| || |||||||||| ||||||||||||||||| | | || |||||||||||||||| | || | |
|
|
| T |
55221333 |
gcctttgtgaccttccttgttggaaatggtgactatgtcaaaggtgtggttggtttagccaaaggtcttcgtaaggtcaaaaccatgtaccctctagtgg |
55221432 |
T |
|
| Q |
184 |
ttgctatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaacca |
283 |
Q |
| |
|
|||| | || ||||||||||| || ||||| | || || || | | |||||||||||||||| ||||||| ||||| |||||||| || || |
|
|
| T |
55221433 |
ttgcagtgttgcctgatgttcctgagcaacataggaatattctcatcgctcaaggttgcattgttagagagattgcacctgtttaccctcctaagaatca |
55221532 |
T |
|
| Q |
284 |
aaccgaatttgctatggcatattatgtcatcaattactccaaactacgtat |
334 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
55221533 |
aacccaatttgctatggcttattatgtcatcaactactccaaactacgtat |
55221583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 334
Target Start/End: Original strand, 37697467 - 37697720
Alignment:
| Q |
81 |
cgtgcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttgg |
180 |
Q |
| |
|
|||||||| || || |||||||||||||| | |||||| | || ||||||||||||||||| ||||| | | ||| |||||||||||| ||||| | |
|
|
| T |
37697467 |
cgtgccttcgtcaccttccttgctggaaatggtgattatgtgaagggtgttgttggtttagctaaaggtcttcgtaaagtcaaaaccatgtatcctttag |
37697566 |
T |
|
| Q |
181 |
ttgttgctatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaa |
280 |
Q |
| |
|
| ||||| | |||||||||||||| |||||||| | || || || || |||||||||||||||| || ||||| ||||| || ||||||| || |
|
|
| T |
37697567 |
tggttgcagtgttacctgatgttcctcaagaacataggaatattctcacctctcaaggttgcattgttagagaaattgaacctgtttatcctccagaaaa |
37697666 |
T |
|
| Q |
281 |
ccaaaccgaatttgctatggcatattatgtcatcaattactccaaactacgtat |
334 |
Q |
| |
|
|||||| | ||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
37697667 |
ccaaactcagtttgccatggcttattatgtcatcaactactccaaattacgtat |
37697720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 334
Target Start/End: Complemental strand, 37688052 - 37687798
Alignment:
| Q |
81 |
cgtgcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttgg |
180 |
Q |
| |
|
|||||||| || || |||||||||||||| | |||||| | || ||||||||||||||||| ||||| | | ||| |||||||||||| ||||| | |
|
|
| T |
37688052 |
cgtgccttcgtcaccttccttgctggaaatggtgattatgtgaagggtgttgttggtttagctaaaggtcttcgtaaagtcaaaaccatgtatcctttag |
37687953 |
T |
|
| Q |
181 |
ttgttgctatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctcca-gcca |
279 |
Q |
| |
|
| ||||| | |||||||||||||| |||||||| | || || || || |||||||||||||||| || ||||| ||||| || |||||| | | |
|
|
| T |
37687952 |
tggttgcagtgttacctgatgttcctcaagaacataggaatattctcacctctcaaggttgcattgttagagaaattgaacctgtttatcctccaagaaa |
37687853 |
T |
|
| Q |
280 |
accaaaccgaatttgctatggcatattatgtcatcaattactccaaactacgtat |
334 |
Q |
| |
|
||||||| | ||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
37687852 |
accaaactcagtttgccatggcttattatgtcatcaactactccaaattacgtat |
37687798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University