View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_34 (Length: 381)
Name: NF12023_low_34
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 3427158 - 3427505
Alignment:
| Q |
16 |
agggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaag |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427158 |
agggaaattgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaag |
3427257 |
T |
|
| Q |
116 |
ataccatctatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427258 |
ataccatctatgaaaaggaaaaaagagccaagaattatgaacttgaagatcaagattagggaaaccaacttgggaatatgcaccatcacaataagcacaa |
3427357 |
T |
|
| Q |
216 |
tgaatatttgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggc-tttttgtacttttgtagatattcatcattga |
314 |
Q |
| |
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|| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
3427358 |
tggatgtttgcttgttgtatgaaactacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattga |
3427457 |
T |
|
| Q |
315 |
ctaaatgtgctgcttgtctaacccttaagggttgagttgatgaaggaa |
362 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
3427458 |
ctaaatgtgctgcttgtcttacccttaagggttgatttgatgaaggaa |
3427505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 3433349 - 3433700
Alignment:
| Q |
16 |
agggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433349 |
agggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaag |
3433448 |
T |
|
| Q |
116 |
ataccatctatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3433449 |
ataccatctatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaagattaggaaaaccaacttgggaatatgcaccatcacaataagcacaa |
3433548 |
T |
|
| Q |
216 |
tgaatatttgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggc-tttttgtacttttgtagatattcatcattga |
314 |
Q |
| |
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|| || |||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||| |
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| T |
3433549 |
tggatgtttgcttgttgtatgaaattacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtatttttgtagatattcatcgttga |
3433648 |
T |
|
| Q |
315 |
ctaaatgtgctgcttgtctaacccttaagggttgagttgatgaaggaaattt |
366 |
Q |
| |
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| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3433649 |
ccaaatgtgctgcttgtcttacccttaagggttgagttgatgaaggaaattt |
3433700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 11897118 - 11896767
Alignment:
| Q |
16 |
agggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaag |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
11897118 |
agggaaatcgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacctaagatcctttcatagaaataaag |
11897019 |
T |
|
| Q |
116 |
ataccatctatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaa |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11897018 |
gtaccacctatgaaaaggaaaaaagagccaagagccatgaacttgaagatcaaggttagggaagccaacttgggaatatgcaccatcacaataagcacag |
11896919 |
T |
|
| Q |
216 |
tgaatatttgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggct-ttttgtacttttgtagatattcatcattga |
314 |
Q |
| |
|
|| | ||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||| ||||| ||||||||||| |||| |
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| T |
11896918 |
tggacgtttgcttgttgcatgaaactacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtatttttgaagatattcatcgttga |
11896819 |
T |
|
| Q |
315 |
ctaaatgtgctgcttgtctaacccttaagggttgagttgatgaaggaaattt |
366 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
11896818 |
ccaaatgtgctgcttgtctaacccttaagggttgagttaatggaggaaattt |
11896767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 11912451 - 11912104
Alignment:
| Q |
16 |
agggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
11912451 |
agggaaattgcatgccattaggagcgtcaaagttccaaaatggtaaagcaaaggctggatcattgatcaaactacccaagattctctcatggaaataaag |
11912352 |
T |
|
| Q |
116 |
ataccatctatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11912351 |
gtaccatctatgaaaaggaaaaaagagccaagagttatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaa |
11912252 |
T |
|
| Q |
216 |
tgaatatttgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggcttt-ttgtacttttgtagatattcatcattga |
314 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| |||| ||||| |||||| |||| |||||||||| ||||| ||||| |||||||| ||||| | |
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| T |
11912251 |
tggatgtttgcttgttgtatgaaactacgtggatcattggatggtaatgctttcgtgagctcaatggctttcttgtatttttgaagatattcgtcattaa |
11912152 |
T |
|
| Q |
315 |
ctaaatgtgctgcttgtctaacccttaagggttgagttgatgaaggaa |
362 |
Q |
| |
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| |||| |||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
11912151 |
ccaaatttgctgcttgtcttacccttaagggttgatttgatgaaggaa |
11912104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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