View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_35 (Length: 377)
Name: NF12023_low_35
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_35 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 287 - 636
Alignment:
| Q |
13 |
gagaagtagaagttagcactgtttcataccgtgcttcaagtttgcagcgcaacgcatactttatatcaccaaacaaatagttaacattcgagacagcatt |
112 |
Q |
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| T |
287 |
gagaagtagaagttagtactgtttcataccgtgcttcaagtttgcagcgcaacgcatactttatataaccaaacaaatagttaacattcgagacagcatt |
386 |
T |
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| Q |
113 |
tttgagcctgttcaaccatacatgtacgctaacagcatcatcattaggtacaacttcaaaattgagcagttctgtctggagcttttccaagagtggaatg |
212 |
Q |
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| T |
387 |
tttgagcctgttcaaccatacatgtacgctaacagcatcatcattaggtacaacttcaaaattgagcagttctgtctggagcttttccaagagtggaatg |
486 |
T |
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| Q |
213 |
tcaagattcgtcttcctgtaggtgtccatgaactcactagaaacaatcttgtttaacaacactttcacacaagttgagagggctgtttctgacacaaaac |
312 |
Q |
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| T |
487 |
tcaagattcgtcttcctgtaggtgtccatgaactcactagaaacaatcttgtttaacaacactttcacacaagttgagagggctgtttctgacacaaaac |
586 |
T |
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| Q |
313 |
tctccattacttgctttgtttgtttgtaggaagaagaagaagaatagtag |
362 |
Q |
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| T |
587 |
tctccattacttgctttgtttgtttgtaggaagaagaagaagaatagtag |
636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 123 - 355
Target Start/End: Complemental strand, 17311169 - 17310937
Alignment:
| Q |
123 |
ttcaaccatacatgtacgctaacagcatcatcattaggtacaacttcaaaattgagcagttctgtctggagcttttccaagagtggaatgtcaagattcg |
222 |
Q |
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| T |
17311169 |
ttcaaccatacattgacactaacagcatcatcgttaactacaacttcaaaactgagcagttctgtcttgagattttccaagagcgaaacatcaagcttcg |
17311070 |
T |
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| Q |
223 |
tcttcctgtaggtgtccatgaactcactagaaacaatcttgtttaacaacactttcacacaagttgagagggctgtttctgacacaaaactctccattac |
322 |
Q |
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| T |
17311069 |
tcctcctgtagttgtccacgaactcactagaaacaatcttgtttaacatgactttgacgcaagttgagaggagtgtttctaacacaataccttccattac |
17310970 |
T |
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| Q |
323 |
ttgctttgtttgtttgtaggaagaagaagaaga |
355 |
Q |
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| T |
17310969 |
ttgctttgtttgtttgtaaaaataagaagaaga |
17310937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 5964998 - 5964948
Alignment:
| Q |
242 |
gaactcactagaaacaatcttgtttaacaacactttcacacaagttgagag |
292 |
Q |
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| T |
5964998 |
gaactgactagaaacaatcttgtttaacaacaccttcacagaagctgagag |
5964948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 4184389 - 4184341
Alignment:
| Q |
244 |
actcactagaaacaatcttgtttaacaacactttcacacaagttgagag |
292 |
Q |
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| T |
4184389 |
actcactagaaacaatcttgtctaacagcaccttcacagaagttgagag |
4184341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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