View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_37 (Length: 370)
Name: NF12023_low_37
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_37 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 7008417 - 7008785
Alignment:
| Q |
1 |
aaatgacataattcaatgtaatcaagtgttggtgttgtgtcagtgtcaaacaacgggacacaccttctatcaaaagtgttgatgcaactcatcatgcccg |
100 |
Q |
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| T |
7008417 |
aaatgacataattcaatgtaatcaagtgttggtgttctgtcagtgtcaaacaatgggacacaccttcaatcaaaagtgttga-gcaactcatcatgcacg |
7008515 |
T |
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| Q |
101 |
tgcatacaatgctttcctgctcgagtgtttttctcgcttatgagtaaattatgagtcaaactcaacaacaattcacgtgtatatttatatgtaaagagtt |
200 |
Q |
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| T |
7008516 |
tgcgtacaatgcttgcctgctcgagcacttttctcgcttatgagtaaactatgagtcatactcaacaacaattcacgtgtatatttatatgcaaagagtt |
7008615 |
T |
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| Q |
201 |
caaccacataattttaaagcataaagtttgaatcttctcgaatatggttttaaaatgactaccacttttgattgataataatttctctttccccaattta |
300 |
Q |
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| T |
7008616 |
cgaccacataattttaaagcataaagtttaaatcttctcgaatatggttttaaaacgactaccacttttaattgataataatttctctttccccaattta |
7008715 |
T |
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| Q |
301 |
tgaaaaacaaaagtttatatatgttggtttcttaaacattcctcttaaagcaacaaaactaattggaatc |
370 |
Q |
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| T |
7008716 |
tgaaaaacaaaagtttatatatgttggttttttaaacattcctcttaaagcaacaaaactaattggaatc |
7008785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29049906 - 29049947
Alignment:
| Q |
1 |
aaatgacataattcaatgtaatcaagtgttggtgttgtgtca |
42 |
Q |
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| T |
29049906 |
aaattacataattcaatgtaatcatgtgttggtgttgtgtca |
29049947 |
T |
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