View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_39 (Length: 363)
Name: NF12023_low_39
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 27446060 - 27446401
Alignment:
| Q |
1 |
atttctcattaacaatacgcagatgacattctttgaataggtgaagcatcagtgcagaatcttggactatgaatgctcgttcgagaggttttgagatggt |
100 |
Q |
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| T |
27446060 |
atttctcattaacaatacgctgatgacattctttgaataggtgaagcatcagtgcagaatcttggactatgaatgctcgttcgagaggttttgagatggt |
27446159 |
T |
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| Q |
101 |
gtccgacttcaaagttattatttggaatagttaatgggggttaatgttcctaatcaacttttggagatggcttgtaatttcttaaattgtagtcaaggcg |
200 |
Q |
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| T |
27446160 |
gtccgacttcaaagttattatttggaatagttgatgggggttaatgttcctaatcaacttttggagatggcttgtaatttcttaaattgtagtcaaggcg |
27446259 |
T |
|
| Q |
201 |
ctattccttttaagcatctgggaacctatgttggataaattgtgtggtagattgaattcttggagaaataaatatgttaatattgggggccatatagtgt |
300 |
Q |
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| T |
27446260 |
ctattccttttaagcatctgggaacctatgttggataaattgtgtggtaaattgaattcttggaaaaataaatatgttaatattgggggccatatagtgt |
27446359 |
T |
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| Q |
301 |
tggttaatttggttttgaattccgttccgattttttaatttg |
342 |
Q |
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| T |
27446360 |
tggttaatttggttttgaattctgttccgattttttaatttg |
27446401 |
T |
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