View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_44 (Length: 352)
Name: NF12023_low_44
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 1316261 - 1316434
Alignment:
| Q |
13 |
aattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaacgagttcaaaaggactattgaagca |
112 |
Q |
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| T |
1316261 |
aattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaacgagttcaaaaggactattgaagca |
1316360 |
T |
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| Q |
113 |
attaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
186 |
Q |
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| T |
1316361 |
attaatgtatttgagttgacattaaaatcgaacaagctatgcaattttacataaacatattgtccagagcctaa |
1316434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 183 - 348
Target Start/End: Original strand, 1316474 - 1316639
Alignment:
| Q |
183 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccgggcactctatcactcctagttgttatatttggaagcctattttcataa |
282 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccaggcactctatcactcctagttgttatatttggaagcctattttcataa |
1316573 |
T |
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| Q |
283 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcttcttttctt |
348 |
Q |
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| T |
1316574 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcgtcttttctt |
1316639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 43486621 - 43486770
Alignment:
| Q |
201 |
actagtttttccagcattatctccctgcctcccgggc--actctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
298 |
Q |
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| T |
43486621 |
actagtttttccagcattatctccctgcctcctggtcccactctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
43486720 |
T |
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| Q |
299 |
atgcctccatggtatatgccaaatcctaatccagtttttcttcttttctt |
348 |
Q |
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| T |
43486721 |
atgccttcatggtatatgccaaatcctaatccaattttttttcttttctt |
43486770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 43483788 - 43483871
Alignment:
| Q |
13 |
aattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaacgagttcaa |
96 |
Q |
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| T |
43483788 |
aattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaatgagttcaa |
43483871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 43486463 - 43486549
Alignment:
| Q |
100 |
gactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
186 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||||||||||||| |
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| T |
43486463 |
gactattgaagcaattaatgtatttgacttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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