View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_47 (Length: 342)
Name: NF12023_low_47
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 33455423 - 33455132
Alignment:
| Q |
18 |
attgcataatcatagaaataaaaataaaatatcagtcatgcataaattaagaatgaagaaacttactggaaaattattaggagaggggatgttgaaacta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33455423 |
attgcataatcatagaaataaaaataaaatatcagtcatgcataaattaagaatgaagaaacttactggaaaattattaggagatgggatgttgaaacta |
33455324 |
T |
|
| Q |
118 |
aaacgggaagaaaatggtttgtgggattagttaaaagtggtttttgttggactcaaagcggtttattgtgctaattgaggagttttaggttttggtgttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33455323 |
aaacgggaagaaaatggtttgtgggattagttaaaagtggtttttgttggactcaaagcggtttattgtgctaattgaggagtttcaggttttggtgttt |
33455224 |
T |
|
| Q |
218 |
ggaccaatgaacattgagcaaggacagaaagatatgttttaagaattctcaaatgagaatcacaaacatctcagagcacctccagcaacagt |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33455223 |
ggaccaatgaacattgagcaagtacagaagaatatgttttaagaattctcaaatgagaatcacaaacatctcagagcacctccagcaacagt |
33455132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 36925940 - 36926223
Alignment:
| Q |
18 |
attgcataatcatagaaataaaaataaaatatcagtcatgcataaattaagaatgaag-----------aaacttactggaaaattattaggagagggga |
106 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
36925940 |
attgaataatcatagaaatcaaaataaaata-caatcatgcataaattaagaatgaagaataatggaagaaacttactggaggattattaggagagggga |
36926038 |
T |
|
| Q |
107 |
tgttgaaactaaaacgggaagaaaatggtttgtgggattagttaaaagtggtttttgttggactcaaagcggtttattgtgctaattgaggagttttagg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||| |
|
|
| T |
36926039 |
tgttgaaactaaaacgggaagaaaatggtttgtggaattaattaaaagtggtttttgttggactcaaagcggtttattgtgctgatcgagaagtttaagg |
36926138 |
T |
|
| Q |
207 |
ttttggtgtttggaccaatgaacattgagcaaggacagaaagatatgtttta-agaattctcaaatgagaatcacaaacatctca |
290 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||||||||| |||||||| | | |||| |||||||||||||||||||| |||| |
|
|
| T |
36926139 |
ttttggtgtttgggccaatgagcaatgagcaaggacagaaaaatatgtttaagaaaattgtcaaatgagaatcacaaacagctca |
36926223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 29060382 - 29060343
Alignment:
| Q |
18 |
attgcataatcatagaaataaaaataaaatatcagtcatg |
57 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29060382 |
attgcataatcgtagaaataaaaataaaatatcagtcatg |
29060343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 48834740 - 48834701
Alignment:
| Q |
18 |
attgcataatcatagaaataaaaataaaatatcagtcatg |
57 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48834740 |
attgcataatcgtagaaataaaaataaaatatcagtcatg |
48834701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University