View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_53 (Length: 315)
Name: NF12023_low_53
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 41469252 - 41469553
Alignment:
| Q |
1 |
caaattcatattgactaaaattaggacacaatcctagttttgtatggcgtaacatttttagtgcgaaaatggtggttaggcatggtacgaggtggataat |
100 |
Q |
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| T |
41469252 |
caaattcatattgactaaaattaggacacaatcctagttttgtatggcgtagcatttttagtgcgaaaatggtggttaggcatggtacgaggtggataat |
41469351 |
T |
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| Q |
101 |
tggcagcggctatgacatttcaatgatcaatgaaccttggataggaatgggactgcgtgttccccctgcagccccgaatgatttatcttatcaaggttat |
200 |
Q |
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| T |
41469352 |
tggcagcggctatgacatttcaatgatcaatgaaccttggataggaatgggactgcgtgttccccctgcagccccggatgatttatcttatcaaggttat |
41469451 |
T |
|
| Q |
201 |
tcggtaggacatttgattcatcaagatgtgaagacttgaaatgaaccacttttcagatgtatttttgaggcaggaacagctcatcaaattctgaatacgc |
300 |
Q |
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| T |
41469452 |
tcggtaggacatttgattcatcaagatgtgaagacttggaatgaaccacttgtcatatgtatttttgaggcaggaacagctcagcaaattctgaatacgc |
41469551 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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| T |
41469552 |
ct |
41469553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 3237318 - 3237385
Alignment:
| Q |
18 |
aaattaggacacaatcctagttttgtatggcgtaacatttttagtgcgaaaatggtggttaggcatgg |
85 |
Q |
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| T |
3237318 |
aaattaggacacaatcctagttttgtttggcggagcatttttagcgcaaaactggttgtgaggcatgg |
3237385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 15788768 - 15788832
Alignment:
| Q |
18 |
aaattaggacacaatcctagttttgtatggcgtaacatttttagtgcgaaaatggtggttaggca |
82 |
Q |
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| T |
15788768 |
aaattaggacataatccaagttttgtttggcgtagcatctttggtgcaaaagtggttgttaggca |
15788832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 68 - 289
Target Start/End: Complemental strand, 11595200 - 11594979
Alignment:
| Q |
68 |
aatggtggttaggcatggtacgaggtggataattggcagcggctatgacatttcaatgatcaatgaaccttggataggaatgggactgcgtgttccccct |
167 |
Q |
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| T |
11595200 |
aatggtggttaggcatggtacgaggtggagaattggcagtggctttgatatttcaatgattgatgaaccttggatagaaatgggactgcgtgctccccct |
11595101 |
T |
|
| Q |
168 |
gcagccccgaatgatttatcttatcaaggttattcggtaggacatttgattcatcaagatgtgaagacttgaaatgaaccacttttcagatgtatttttg |
267 |
Q |
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||||||||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||| |||||| | || | |||| |||||||| |
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| T |
11595100 |
gcagccccggatgctttgtctcttcaaggttattcggtaggtcatttgattcatcaagatacgaagacttggaatgaagaatttgtaagatttatttttg |
11595001 |
T |
|
| Q |
268 |
aggcaggaacagctcatcaaat |
289 |
Q |
| |
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||||||||||| |||| ||||| |
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| T |
11595000 |
aggcaggaacatctcaacaaat |
11594979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 11109087 - 11108820
Alignment:
| Q |
17 |
aaaattaggacacaatcctagttttgtatggcgtaacatttttagtgcgaaaatggtggttaggcatggtacgaggtggataattggcagcggctatgac |
116 |
Q |
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|||||| ||||| |||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||| |||| ||| |
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| T |
11109087 |
aaaattgggacataatcctagttttgtttggcgtagcattttttg------aatggtggttaggcatggtacgaggtggagaattggcaatggctttgat |
11108994 |
T |
|
| Q |
117 |
atttcaatgatcaatgaaccttggataggaatgggactgcgtgttccccctgcag-ccccgaatgatttatcttatcaaggttattcggtaggacatttg |
215 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| ||| ||| ||| |||| ||||||||||||| |||||| |
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| T |
11108993 |
atttcaatgattgatgaaccttggataggaatggaactgcgtgttccccctgctgcccccggatgctttgtctcttcaaagttattcggtaggtcatttg |
11108894 |
T |
|
| Q |
216 |
attcatcaagatgtgaagacttgaaatgaaccacttttcagatgtatttttgaggcaggaacagctcatcaaat |
289 |
Q |
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|||||||||||| ||||||||| |||||| |||| | |||| ||||||||||||||| |||||||| ||||| |
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| T |
11108893 |
attcatcaagatacgaagacttggaatgaagaacttgtaagatttatttttgaggcaggtacagctcaacaaat |
11108820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 16331566 - 16331634
Alignment:
| Q |
17 |
aaaattaggacacaatcctagttttgtatggcgtaacatttttagtgcgaaaatggtggttaggcatgg |
85 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| | ||||||||| || ||| |||| || |||||||| |
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| T |
16331566 |
aaaattaggacataatcctagttttgtttggcggagcatttttagcgcaaaactggttgtgaggcatgg |
16331634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 8723435 - 8723499
Alignment:
| Q |
18 |
aaattaggacacaatcctagttttgtatggcgtaacatttttagtgcgaaaatggtggttaggca |
82 |
Q |
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||||||||||| ||||| |||||||| ||||||| ||| ||| |||| ||| |||| |||||||| |
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| T |
8723435 |
aaattaggacataatccaagttttgtttggcgtagcatctttggtgcaaaagtggttgttaggca |
8723499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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