View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_54 (Length: 313)
Name: NF12023_low_54
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 8854612 - 8854909
Alignment:
| Q |
11 |
caaagggagtgatggaagtgtggaaaggctcacacactgtggagaagaagttgatgattgaaaagaagccttgcaatcaaagtggttagatgaaaaggat |
110 |
Q |
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| T |
8854612 |
caaagggagtgatggaagtgaggaaaggctcacacactgtggagaagaagttgatgattgaaaagaagccttgcaatcaaagtggttagatgaaaaggat |
8854711 |
T |
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| Q |
111 |
atagtgagagaagatgagattaaggccattgttaataattattgaacacttttcaaactaaaatata-nnnnnnnncccagttaaaatatagcttaagtt |
209 |
Q |
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| T |
8854712 |
atagtgagagaagatgagattaaggccattgttaataattattgaacacttttcaaactaaaatatatttttttttcccagttaaaatatagcttaagtt |
8854811 |
T |
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| Q |
210 |
attaata---------tgtttctaatgtattagtctcaattgtgctttgataatttgcaaatgaatgtggaaatcctgttcctacaaattgaagtgaa |
298 |
Q |
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| T |
8854812 |
attaatatgtttcttttgtttctaatgtattagtctcaattgtgctttgataatttgcaaatgaatgtggaaatcctgttcctacaaattgaagtgaa |
8854909 |
T |
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