View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_57 (Length: 312)
Name: NF12023_low_57
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 6100061 - 6099776
Alignment:
| Q |
17 |
aatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatactttgtcatta |
116 |
Q |
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| T |
6100061 |
aatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatactttgtcatta |
6099962 |
T |
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| Q |
117 |
tgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgtcacacattagtaaaccaaggatatggaatttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6099961 |
tgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgtcacacattagtaaaccaaggatatggaatttgt |
6099862 |
T |
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| Q |
217 |
aagttcatacacagtcttcaaaatagttgtgtccaaggatcaagttctcgacgaataactcatgaattatacttgtaacattcatc |
302 |
Q |
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| T |
6099861 |
aagttcatacacagtctgcaaaatagttgtctccaaggatcaagttctcgacgaataactcatgaattatacttgtaacattcatc |
6099776 |
T |
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Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 28055486 - 28055778
Alignment:
| Q |
17 |
aatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatactttgtcatta |
116 |
Q |
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||||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |
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| T |
28055486 |
aatgaaaaggcaaataaga-taaaattgggatggtaacaacgatctcagcaaaggaaattacatcagggtgctcaattacaaacgcatgctttgtcattc |
28055584 |
T |
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| Q |
117 |
tgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgt-------cacacattagtaaaccaaggatatgg |
209 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||| |||| | || |
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| T |
28055585 |
tatttttatgctcttttaaactacaaaacaatcattcaaagcattccacctttagtaaattccgagttgacaacaacacattagtaaacctaggaaaagg |
28055684 |
T |
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| Q |
210 |
aatttgtaagttcatacacagtcttcaaaatagttgt-gtccaaggatcaagttctcgacgaataactcatgaattatacttgtaacattcatc |
302 |
Q |
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| || ||||||||||||| |||| |||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||| ||||||| |
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| T |
28055685 |
agttcgtaagttcatacatggtctgcaaaatagttgtattccaaggatcaagttcccgacaaataactcaggaatgacacttgtaatattcatc |
28055778 |
T |
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