View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_59 (Length: 309)
Name: NF12023_low_59
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_59 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 51270 - 50989
Alignment:
| Q |
14 |
agaggatatagtataaaaccaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
51270 |
agaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggaaaaaaatgtattcaacc |
51172 |
T |
|
| Q |
113 |
caattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
210 |
Q |
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|
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51171 |
caattagggggcgaagaagtgttaaagagtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
51072 |
T |
|
| Q |
211 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51071 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
50989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 6683 - 6962
Alignment:
| Q |
14 |
agaggatatagtataaaaccaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacc |
112 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6683 |
agaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacc |
6782 |
T |
|
| Q |
113 |
caattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6783 |
caattagggggagaag---tgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
6879 |
T |
|
| Q |
211 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6880 |
aaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
6962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 16596 - 16875
Alignment:
| Q |
14 |
agaggatatagtataaaaccaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16596 |
agaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacc |
16695 |
T |
|
| Q |
113 |
caattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16696 |
caattagggggagaag---tgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
16792 |
T |
|
| Q |
211 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16793 |
aaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
16875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 22386 - 22107
Alignment:
| Q |
14 |
agaggatatagtataaaaccaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22386 |
agaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacc |
22287 |
T |
|
| Q |
113 |
caattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22286 |
caattagggggagaag---tgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
22190 |
T |
|
| Q |
211 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22189 |
aaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
22107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 15708839 - 15709118
Alignment:
| Q |
14 |
agaggatatagtataaaaccaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15708839 |
agaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacc |
15708938 |
T |
|
| Q |
113 |
caattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15708939 |
caattagggggagaag---tgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
15709035 |
T |
|
| Q |
211 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15709036 |
aaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
15709118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 59 - 246
Target Start/End: Complemental strand, 26795911 - 26795723
Alignment:
| Q |
59 |
aaaagatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagact |
158 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| | ||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
26795911 |
aaaagatgatctttagttaaaaagctaaagggatggaaa-agatgcattcaacacaattaggggaagaagaagtgttaaagggtccaaaatgtcaagact |
26795813 |
T |
|
| Q |
159 |
g--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaa |
246 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26795812 |
gtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaaggttttaactgccatacacatatcagaa |
26795723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 3380903 - 3381181
Alignment:
| Q |
14 |
agaggatatagtataaaaccaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3380903 |
agaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacc |
3381002 |
T |
|
| Q |
113 |
caattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
210 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381003 |
caattagggg----agaagtgttaaagggactaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca |
3381098 |
T |
|
| Q |
211 |
aaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3381099 |
aaaacaaagattttaactgccaaacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
3381181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 293
Target Start/End: Original strand, 44498317 - 44498579
Alignment:
| Q |
31 |
accaccctacgaccaaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaaga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
44498317 |
accaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaactagggggagaag- |
44498415 |
T |
|
| Q |
130 |
agtgttaaagggtctaaaatgtcaagactg--ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
227 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498416 |
--tgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
44498513 |
T |
|
| Q |
228 |
tgccatacacatatcagaacttcagaagcacttggattcctactgatagaaaattagtggaaaaaa |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44498514 |
tgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
44498579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 30112170 - 30112125
Alignment:
| Q |
249 |
tcagaagcacttggattcctactgatagaaaattagtggaaaaaag |
294 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30112170 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaag |
30112125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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