View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_6 (Length: 684)
Name: NF12023_low_6
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 7 - 665
Target Start/End: Original strand, 37221539 - 37222197
Alignment:
| Q |
7 |
ggagcagagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggc |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37221539 |
ggagcagagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctatttctaaggataccatgattgaggc |
37221638 |
T |
|
| Q |
107 |
tgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggattttatttttctgtcatgct |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221639 |
tgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggattttatttttctgtcatgct |
37221738 |
T |
|
| Q |
207 |
ttggttttctggtagtggaaattttgtgcttgttctgaatttttctgtcatggttctaatatacacacatcaagcccaataatcatttatacaaacacca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221739 |
ttggttttctggtagtggaaattttgtgcttgttctgaatttttctgtcattgttctaatatacacacatcaagcccaataatcatttatacaaacacca |
37221838 |
T |
|
| Q |
307 |
tttaagtaacttttgaattttatttctttctaaattttgctctgtttttgttatnnnnnnnttgttctgttttaataatcc-tttagaatgttaaaaaac |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
37221839 |
tttaagtaacttttgaattttatttctttctaaattttgctctgtttttgttataaaaaaattgttctgttttaataatccgtttagaatgttaaaaaac |
37221938 |
T |
|
| Q |
406 |
gtttgattatggtatagttggttttcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaa |
505 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221939 |
gtttga-tatggtatagttggttttcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaa |
37222037 |
T |
|
| Q |
506 |
tgcattaaatgatgtttgtttatatattgattgaatgatatgtttgtattttatgtatgatcactatcggttcttttattattannnnnnnctttaaatt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
37222038 |
tgcattaaatgatgtttgtttatatattgattgaatgatatgtttgtattttatgtatgatcactatcggttcttttattattatttttttctttaaatt |
37222137 |
T |
|
| Q |
606 |
ttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgttact |
665 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37222138 |
ttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgttact |
37222197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 37201045 - 37201237
Alignment:
| Q |
14 |
agaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttg |
113 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||| | | |||||||||||||||| |
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|
| T |
37201045 |
agaggtttctatggattatggattgttcatcacatatccacttagaagtgaggacactttggagtctattgctaagggtgcagagattgaggctgagttg |
37201144 |
T |
|
| Q |
114 |
ctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggatttt--atttttctgtcatg |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |
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| T |
37201145 |
ctgcagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggttagttttttaatttttctgtcatg |
37201237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 37227018 - 37227188
Alignment:
| Q |
13 |
gagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagtt |
112 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||| |||||||| || | ||||||||||| || ||||||||| |||||| | || ||| |||||| |
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|
| T |
37227018 |
gagaggtttcaaaagattatggtttgttcattacatatcctcttagacctgacgacactttggaatccattgctaagtataccaaggttaagggtgagtt |
37227117 |
T |
|
| Q |
113 |
gctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggtt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
37227118 |
gctgcagaggtacaaccctggtgtcaatttcagccaaggaaggggtcttgtttatattccagggaaaggtt |
37227188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 37440593 - 37440762
Alignment:
| Q |
17 |
ggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactt----tggagtctattgctaaggataccatgattgaggctgagtt |
112 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| |||||||||||| ||||||||| ||||||| ||||| |||||||||| ||| || |||||||| |
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|
| T |
37440593 |
ggtttccaaggattatggtttgttcgtaacatatcctcttagttctgaggacacttagtttggagtccattgcaaaggataccaagatggatgctgagtt |
37440692 |
T |
|
| Q |
113 |
gctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
182 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37440693 |
gctgcagaggtacaacccaggtgtgaatttcagccaaggaagtggtctggtttttattccagggaaaggt |
37440762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 37386930 - 37386765
Alignment:
| Q |
17 |
ggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctg |
116 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| ||| |||| | || || |||||||||| |
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|
| T |
37386930 |
ggtttccaaggattatggtttgttcataacatatcctcttagttctgaggacactttggagtccattgcgaagcatacaaaagttaagcctgagttgcta |
37386831 |
T |
|
| Q |
117 |
cagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
182 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |
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|
| T |
37386830 |
cagaagtacaaccctggtgtgaatttcagcaaaggaagtgggctggtttttattccagggaaaggt |
37386765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 430 - 663
Target Start/End: Original strand, 37230884 - 37231111
Alignment:
| Q |
430 |
tcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttata |
529 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | |
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|
| T |
37230884 |
tcatggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgttattgaaaaatgcattaagtgatgtttttttgtt |
37230983 |
T |
|
| Q |
530 |
tattgattgaatgatatgtttgtattttatgtatgatcactatcggttcttt--tattattannnnnnnctttaaattttgcagatgaaaatggatttta |
627 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||| ||||||| | ||||| |||| ||||||||||||||||||||| |||| |
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|
| T |
37230984 |
tattgat----tgatatgtttgcattttatgtatg---actatttgttcttttgttttattttttattccttt-aattttgcagatgaaaatggagttta |
37231075 |
T |
|
| Q |
628 |
tgttcccttaccccctaggtaagttttattgtgtta |
663 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
37231076 |
tgttcccttgccctctaggtaagtttcattgtgtta |
37231111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 432 - 663
Target Start/End: Original strand, 37227394 - 37227619
Alignment:
| Q |
432 |
atggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttatata |
531 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | || |
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|
| T |
37227394 |
atggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgttattgaaaaatgcattaagtgatgtttttttgttta |
37227493 |
T |
|
| Q |
532 |
ttgattgaatgatatgtttgtattttatgtatgatcactatcggttcttt--tattattannnnnnnctttaaattttgcagatgaaaatggattttatg |
629 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||| |||||| | ||||| |||| ||||||||||||||||||||| |||||| |
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|
| T |
37227494 |
ttgat----ggatctgtttgtattttatgtatg---actatttattcttttgttttattttttattccttt-aattttgcagatgaaaatggagtttatg |
37227585 |
T |
|
| Q |
630 |
ttcccttaccccctaggtaagttttattgtgtta |
663 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
37227586 |
ttcccttgccctctaggtaagtttcattgtgtta |
37227619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 68 - 248
Target Start/End: Original strand, 37215637 - 37215814
Alignment:
| Q |
68 |
cactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgttttt |
167 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||| | |
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|
| T |
37215637 |
cactttggagtccattgctaaggatacgatgattgaaattgagttgctgaagaggtacaac------gtgaatttcagccaaggaagtggtcttgtttat |
37215730 |
T |
|
| Q |
168 |
attccagggaaaggttggat--tttatttttctgtcatgctttggttttctggtag-tggaaattttgtgcttgttctgaattt |
248 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||||| | |||||| ||||| ||| |||||| |||||||||||| ||||||| |
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|
| T |
37215731 |
attcgagggaaaggttagatcattcatttttctgtccttttttggtcttctgatagttggaaagtttgtgcttgttatgaattt |
37215814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 439 - 528
Target Start/End: Original strand, 37215949 - 37216038
Alignment:
| Q |
439 |
agtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttat |
528 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||| |||| |
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|
| T |
37215949 |
agtaatcaataaatgataatattatatcaaactttttatttgtttgttcctctgttttaatgaaaaatgcattaagtgatgtttgattat |
37216038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 37196074 - 37196238
Alignment:
| Q |
18 |
gtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctgc |
117 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| |||||||| || |||| ||||||| | ||| |||| | || ||||| ||||||||||||| |
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|
| T |
37196074 |
gtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaattgatttctaataagactgaaattgatgctgagttgctgc |
37196173 |
T |
|
| Q |
118 |
agaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
182 |
Q |
| |
|
| | ||| ||||||||||| ||||| || ||||| |||||| | |||| |||||| ||||||||| |
|
|
| T |
37196174 |
aaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaaggt |
37196238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 37207570 - 37207617
Alignment:
| Q |
11 |
cagagaggtttctaaggattatggtttgttcatcacataccctcttag |
58 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
37207570 |
cagagaggtttccaaggattatggtttgttcatcacatatccacttag |
37207617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 662
Target Start/End: Original strand, 37216107 - 37216165
Alignment:
| Q |
604 |
ttttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgtt |
662 |
Q |
| |
|
||||||||||| ||||||| |||| || ||||| ||||||| ||||||||||||||||| |
|
|
| T |
37216107 |
ttttgcagatggaaatggactttacgtacccttgccccctaagtaagttttattgtgtt |
37216165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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