View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_61 (Length: 303)
Name: NF12023_low_61
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_61 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 37835912 - 37836197
Alignment:
| Q |
18 |
atctcttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttggagaatttcaagtcttgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835912 |
atctcttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttggagaatttcaagtcttgtg |
37836011 |
T |
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| Q |
118 |
aacatcttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagcttaagtatctaaaaaatatctcattgtttgataatcagttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37836012 |
aacatcttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagctcaagtatctaaaaaatatctcattgtttgataatcagttct |
37836111 |
T |
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| Q |
218 |
caggagtcacacctcaaagcttaggaataaacagcagcatagtgaagttcgactgtatgaataacaagttcagtggtaatatccca |
303 |
Q |
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| T |
37836112 |
caggagtcatacctcaaagcttaggaatcaacagcagaatagtgaagttggacggtatgaataacaagttcagcggtaatatccca |
37836197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 37849287 - 37849572
Alignment:
| Q |
18 |
atctcttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttggagaatttcaagtcttgtg |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37849287 |
atctcttggtaattgcagcaaattagaggaccttgaattttctttcaaccgtttgagaggcgaaattccggtcagtgtttggagaatttcaagtcttgtg |
37849386 |
T |
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| Q |
118 |
aacatcttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagcttaagtatctaaaaaatatctcattgtttgataatcagttct |
217 |
Q |
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| T |
37849387 |
cacatattggttcacaacaacagcctctccagggaactacctttcgagatgacaaagctcaagtatctaaaaaatatctcattgtttgataatcagttct |
37849486 |
T |
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| Q |
218 |
caggagtcacacctcaaagcttaggaataaacagcagcatagtgaagttcgactgtatgaataacaagttcagtggtaatatccca |
303 |
Q |
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| T |
37849487 |
caggagtcacacctcaaagcttgggaataaacagcagcatagtgaagttggactgtatgaataacaagttcagtggtaatatccca |
37849572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 37830208 - 37830493
Alignment:
| Q |
18 |
atctcttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttggagaatttcaagtcttgtg |
117 |
Q |
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||||||||| |||||||||||| | || |||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
37830208 |
atctcttggcaattgcagtaaacttgaagaccttgatttgtctttcaaccgtttgagaggtgaaattccggtcagtatttggagaattcaaagtcttgtg |
37830307 |
T |
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| Q |
118 |
aacatcttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagcttaagtatctaaaaaatatctcattgtttgataatcagttct |
217 |
Q |
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| T |
37830308 |
cacatcttggttcacaacaacgatctctttggggaactacctttggaaatcacaaaccttaagtgtctaaaaaatgtctcattgtttgaaaatcagttct |
37830407 |
T |
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| Q |
218 |
caggagtcacacctcaaagcttaggaataaacagcagcatagtgaagttcgactgtatgaataacaagttcagtggtaatatccca |
303 |
Q |
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| T |
37830408 |
caggagtcatacctcaaagcttgggaatcaacagcagcatagtgaagttggactgtatgaataacaagttcagtggtaatatccca |
37830493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 37841536 - 37841816
Alignment:
| Q |
23 |
ttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttggagaatttcaagtcttgtgaacat |
122 |
Q |
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|||||||||| |||||| ||||||||||| | || ||||||||||| ||||||| ||||||||||| |||||||||||| ||||||| || |||| |
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| T |
37841536 |
ttggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattccggtctttgtttggagaatacaaagtcttttgcacat |
37841635 |
T |
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| Q |
123 |
cttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagcttaagtatctaaaaaatatctcattgtttgataatcagttctcagga |
222 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37841636 |
cttggttcacaacaacagcctctctggagaactaccttttgagatgacagagctcaagtatctaagaaatatctcattgtttgataatcagttctcagga |
37841735 |
T |
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| Q |
223 |
gtcacacctcaaagcttaggaataaacagcagcatagtgaagttcgactgtatgaataacaagttcagtggtaatatccca |
303 |
Q |
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|||| |||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||| |
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| T |
37841736 |
gtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaagttcaatggcaatatccca |
37841816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 26640834 - 26640749
Alignment:
| Q |
189 |
aaatatctcattgtttgataatcagttctcaggagtcacacctcaaagcttaggaataaacagcagcatagtgaagttcgactgta |
274 |
Q |
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| T |
26640834 |
aaatatctcattgtttgacaatcagttctcaggaggcatacctcaaagcttgggaatcaacagcagcattgtgaagttagactgta |
26640749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 36864676 - 36864953
Alignment:
| Q |
18 |
atctcttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttggagaatttcaagtcttgtg |
117 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| || |||| |||||||||||||||| |||||| |
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| T |
36864676 |
atctcttggtaactgcagtaaactagaggaccttgaattgtctttcaaccgtttgagaggaaaaattcaggccagtatttggagaatttcaagccttgtg |
36864775 |
T |
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| Q |
118 |
aacatcttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagcttaagtatctaaaaaatatctcattgtttgataatcagttct |
217 |
Q |
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| |||||||||||| |||||||||||||||||||||| |||||||| ||||| || || | |||||||||||||||||||| |||||||||| |
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| T |
36864776 |
catatcttggttcaccacaacagcctctctggggaactacctttcgaaatgacgaacctcaggtatctaaaaaatatctcat-------caatcagttct |
36864868 |
T |
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| Q |
218 |
caggagtcacacctcaaagcttaggaataaacagcagcatagtgaagttcgactgtatgaataacaagttcagtggtaatatccca |
303 |
Q |
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| T |
36864869 |
caggagtcattcctcaaagcttgggaatcaacaataccttagtgaagttggac-gtatgaataacaagtttaatggtaatatccca |
36864953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 45560642 - 45560748
Alignment:
| Q |
148 |
ggggaactgcctttcgagatgacaaagcttaagtatctaaaaaatatctcattgtttgataatcagttctcaggagtcacacctcaaagcttaggaataa |
247 |
Q |
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|||||||| ||| | ||||||||| |||| ||| | || ||||| |||||||||||||| || | |||||| ||||||| |||||||||||| ||||| | |
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| T |
45560642 |
ggggaacttcctgtggagatgacagagctcaagaacctcaaaaacatctcattgtttgacaacctgttctctggagtcatacctcaaagcttgggaatca |
45560741 |
T |
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| Q |
248 |
acagcag |
254 |
Q |
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| ||||| |
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| T |
45560742 |
atagcag |
45560748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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