View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_62 (Length: 303)
Name: NF12023_low_62
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_62 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 2138781 - 2138508
Alignment:
| Q |
16 |
aaaataatactctttgctttaaaattacagtaggttgatacttgtaaattggaaaaaatgggccacagagtacagagaatagtcagaacactgacaaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2138781 |
aaaataatactctttgctttaaaattacagtaggttgatacttgtaaattggaaaaaatgggccacagagtacagagaatagtcagaacactgacaaagc |
2138682 |
T |
|
| Q |
116 |
gtgacatagttnnnnnnnnncaannnnnnn-ctatgtatgagtgactccaactggatacggatcctctgctgctgggcagcactgcaactcattactcat |
214 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2138681 |
gtgacatagttaaagaaaaacaattttttttctatgtatgagtgactccaactggatacggatcctctgctgctgggcagcactgcaactcattactcat |
2138582 |
T |
|
| Q |
215 |
tccaacaaaaataaaatttaaaaacaccaccaccatgcataaatgaattctcatttattcatgttcataatgcc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2138581 |
tccaacaaaaataaaatttaaaaacaccaccaccatgcataaatgaattctcatttattcatgttcataatgcc |
2138508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University