View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_64 (Length: 300)

Name: NF12023_low_64
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_64
NF12023_low_64
[»] chr3 (1 HSPs)
chr3 (14-300)||(1565196-1565482)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 1565482 - 1565196
Alignment:
Q  14 atgaaagcacgctcaggattgtcaacaattggcgaaagagtcccatcgtaatcaagaaacagtgctattttcttgcctttagcaagattagtaatttgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1565482 atgaaagcacgctcaggattgtcaacaattggcgaaagagtcccatcgtaatcaagaaacagtgctattttcttgcctttagcaagattagtaatttgtt 1565383  T
Q  114 cgaaggccccaattgctgatggaaactctagctgcaaaaattataaaagaggaaacgaataaggaaactgcgcaaaccgaacttccacaacaaattacat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1565382 cgaaggccccaattgctgatggaaactctagctgcaaaaattataaaagaggaaacgaataaggaaactgcgcaaaccgaacttccacaacaaattacat 1565283  T
Q  214 agagttagtactagtatgtgtttcataccagccaggttaaataagcagcatcagcttcagaagatgcaacaccatgaccaatatcca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1565282 agagttagtactagtatgtgtttcataccagccaggttaaataagcagcatcagcttcagaagatgcaacaccatgaccaatatcca 1565196  T

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