View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_68 (Length: 281)
Name: NF12023_low_68
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_68 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 33127812 - 33127546
Alignment:
| Q |
15 |
cagagatgtgacctagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
114 |
Q |
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| T |
33127812 |
cagagatgtgaccaagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
33127713 |
T |
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| Q |
115 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127712 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
33127613 |
T |
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| Q |
215 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatat |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127612 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatat |
33127546 |
T |
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