View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_7 (Length: 604)
Name: NF12023_low_7
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 53033448 - 53032977
Alignment:
| Q |
18 |
actagcaagtgccaaa-gtgtcttgcatatatttttcttttgaaggaaacaacgatgatagttaaacaccttaacttcttaattaattacaattattatt |
116 |
Q |
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| T |
53033448 |
actagcaagtgccaaaagtgtcttgcatatatttttcttttgaaggaaacaacgatgatagttaaacaccttaacttcttaattaattacaattattatt |
53033349 |
T |
|
| Q |
117 |
atagaggtaaaggagaataaattgaattgaatgaggtgataatgatgtgtgcatatataaaagttggacaaacctggtaaggcaataaatgcatcagctt |
216 |
Q |
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| T |
53033348 |
atagaggtaaaggagaataaattgaattgaatgaggtgataatgatgtgtgcatatataaaagttggacaaacctggtaaggcaataaatgcatcagctt |
53033249 |
T |
|
| Q |
217 |
gtcgagccatttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaaccaactaatcatacttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53033248 |
gtcgagccatttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaaccaactaatcatacttaa |
53033149 |
T |
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| Q |
317 |
ttaattaattcaactaaaaatacacatttaatcgttgtagtagtattgtaaaatccaaatatatatactagtggtagtgattaaagtacgtacctctctt |
416 |
Q |
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| T |
53033148 |
ttaattaattcaactaaaaatacacatttaatcgttgtagtagtattgtataatccaaatatatatactagtggtagtgattaaagtacgtacctctctt |
53033049 |
T |
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| Q |
417 |
agcataagtgtctttggaatgactctacataagaaaggaggaagaatcatgaacacaaaatctatacatata |
488 |
Q |
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| T |
53033048 |
agcataagtgtctttggaatgactctacataagaaagtaggaagaatcatgagcacaaaatgtatacatata |
53032977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 479 - 593
Target Start/End: Complemental strand, 53032960 - 53032846
Alignment:
| Q |
479 |
tatacatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
578 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53032960 |
tatatatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
53032861 |
T |
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| Q |
579 |
tcaatcctatgcttc |
593 |
Q |
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| T |
53032860 |
tcaatcctatgcttc |
53032846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 7884850 - 7884778
Alignment:
| Q |
187 |
aacctggtaaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
259 |
Q |
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||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7884850 |
aacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtgcatgtccgatacagc |
7884778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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