View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_70 (Length: 273)
Name: NF12023_low_70
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_70 |
 | |
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| [»] scaffold0557 (2 HSPs) |
| | |
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| [»] scaffold0115 (2 HSPs) |
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| [»] scaffold0442 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 21006194 - 21005948
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21006194 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
21006095 |
T |
|
| Q |
119 |
ttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21006094 |
ttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcaggatagatttgacgctgcatgttt |
21005995 |
T |
|
| Q |
219 |
ttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
265 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
21005994 |
tgattgacattgtgatttggaatcatagtactcatgttgttcttctc |
21005948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 20903478 - 20903237
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| || ||||||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||| |
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|
| T |
20903478 |
caaccatgttcataactggcattggagtactcatcattgtagtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgagg |
20903379 |
T |
|
| Q |
119 |
ttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgttt |
218 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||| | |||||| || |
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|
| T |
20903378 |
atgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccggtgtagatttgatgttgcatgctt |
20903279 |
T |
|
| Q |
219 |
ttattgacattgtgatttggaatcatagtactcgtgttgttc |
260 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
20903278 |
tgattaacaccctgatttggaatcatagtactcatgttgttc |
20903237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 20922078 - 20921838
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||| ||| |||||| ||||||||||||||||||||| || ||||| |
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|
| T |
20922078 |
caaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacctgagg |
20921979 |
T |
|
| Q |
119 |
ttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgttt |
218 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| || |
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|
| T |
20921978 |
atgcaagttt------acactaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctt |
20921885 |
T |
|
| Q |
219 |
ttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
265 |
Q |
| |
|
| ||||| | |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
20921884 |
tgattgataccgtgatttggaatcatagtactcatgttgttcttctc |
20921838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 21005900 - 21005850
Alignment:
| Q |
169 |
tgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttt |
219 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
21005900 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgtttt |
21005850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 41336636 - 41336390
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||| |
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|
| T |
41336636 |
caaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgagg |
41336537 |
T |
|
| Q |
119 |
ttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgttt |
218 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| || |
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|
| T |
41336536 |
atgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctt |
41336437 |
T |
|
| Q |
219 |
ttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
265 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
41336436 |
tgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
41336390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 5729 - 5981
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
5729 |
caaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaaa |
5828 |
T |
|
| Q |
119 |
ttg------catgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgc |
212 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
5829 |
ctgaatgtgcatgttttgattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgacgttgc |
5928 |
T |
|
| Q |
213 |
atgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
265 |
Q |
| |
|
||| ||| ||| ||| || ||||||||||||||||||| |||||||| |||| |
|
|
| T |
5929 |
atgctttgattaacaccgtaatttggaatcatagtactcatgttgttcttctc |
5981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 5323 - 5070
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
5323 |
caaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaga |
5224 |
T |
|
| Q |
119 |
t------tgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgc |
212 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| | |
|
|
| T |
5223 |
cagcacgtgcatgttttcattaacacttggagttggaaccatagtactcacgatggtgttcttgttttgttgaacacttctagggtagatttgacgctac |
5124 |
T |
|
| Q |
213 |
atgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctca |
266 |
Q |
| |
|
||| ||| ||| ||| |||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
5123 |
atgctttaattaacactgtgatttagaatcatagtattcatgttgttcttctca |
5070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 47176 - 46924
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| || |||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
47176 |
caaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagacttgaga |
47077 |
T |
|
| Q |
119 |
ttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgc |
212 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
47076 |
ctgcatgtgcatgttttgattaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttgacgttgc |
46977 |
T |
|
| Q |
213 |
atgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
265 |
Q |
| |
|
||| ||| ||| ||| ||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
46976 |
atgctttgattaacaccgtgatttggaatcatggtactcatgttgttcttctc |
46924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 47841 - 48039
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag- |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| ||||||| |
|
|
| T |
47841 |
caaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgaga |
47940 |
T |
|
| Q |
118 |
--------gttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacg |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
47941 |
ctgctgcatgtgcatgttttgattaacactaggagttggaaccataatactcacgatggtgttcttgttttgttgaacacttacaagctagatttgacg |
48039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 9160 - 9370
Alignment:
| Q |
56 |
tgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgt------tagaattaacactaggagttgga |
149 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
9160 |
tgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactaggagttgga |
9259 |
T |
|
| Q |
150 |
accatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtac |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||| ||| ||| ||| || ||||||||||||||||| |
|
|
| T |
9260 |
accatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatcatagtac |
9359 |
T |
|
| Q |
250 |
tcgtgttgttc |
260 |
Q |
| |
|
|| |||||||| |
|
|
| T |
9360 |
tcatgttgttc |
9370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 8688 - 8435
Alignment:
| Q |
19 |
caaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgagg |
118 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| |||||||||||||||| | |||||| | |||| ||||| ||||||||| ||||| ||||||| |
|
|
| T |
8688 |
caaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagacttgaga |
8589 |
T |
|
| Q |
119 |
ttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgc |
212 |
Q |
| |
|
||||||| | ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| ||| |
|
|
| T |
8588 |
ctgcatgtgcatgttttgatttacactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttgacgttgc |
8489 |
T |
|
| Q |
213 |
atgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctca |
266 |
Q |
| |
|
||| ||| ||| ||| ||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
8488 |
atgctttaattaacaccgtgatttagaatcatagtattcatgttgttcttctca |
8435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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