View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_8 (Length: 573)

Name: NF12023_low_8
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_8
NF12023_low_8
[»] chr6 (2 HSPs)
chr6 (1-217)||(19843209-19843426)
chr6 (287-356)||(19843079-19843148)
[»] chr7 (4 HSPs)
chr7 (1-217)||(6607940-6608155)
chr7 (1-217)||(6625951-6626160)
chr7 (287-359)||(6626648-6626720)
chr7 (287-358)||(6607502-6607568)
[»] chr8 (3 HSPs)
chr8 (356-549)||(17312361-17312554)
chr8 (356-557)||(17259735-17259934)
chr8 (356-549)||(17335623-17335816)
[»] chr1 (2 HSPs)
chr1 (2-185)||(29494901-29495084)
chr1 (287-358)||(29494735-29494805)
[»] chr3 (1 HSPs)
chr3 (6-120)||(9793660-9793774)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 19843426 - 19843209
Alignment:
Q  1 cgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19843426 cgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaa 19843327  T
Q  101 aggggagaatcgaagatcgacgacggcgacggggaaatctcgtgaggggctagagttgggagaaaagggaaatggcatgggagagaaagagatgggccg- 199  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||     
T  19843326 aggggagaatcgaagatcaacgacggtgacggtgaaatctcgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagagagatgggccga 19843227  T
Q  200 atcctctactgcagttaa 217  Q
    |||||||||| |||||||    
T  19843226 atcctctactacagttaa 19843209  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 19843148 - 19843079
Alignment:
Q  287 attaaatgtgccacacaagagggatgtatgagtggtatgccagctatggaggtatgtgtatcagtgctct 356  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  19843148 attaaatgtgccacacaagaggggtgtatgagtggtatgccagctatggaggtatgtataacagtgctct 19843079  T

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Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6608155 - 6607940
Alignment:
Q  1 cgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6608155 cgtcggcgagggtgctacagttaaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatgggtgaa 6608056  T
Q  101 aggggagaatcgaagatcgacgacggcgacggggaaatctcgtgaggggctagagttgggagaaaagggaaatggcatgggagagaaagagatggg-ccg 199  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||||||| ||     
T  6608055 aggggagaatcgaatatcgacgacggcgacggcgaaatctcgtgaggtgctagggttgggagaaaagggaaatggcat--gagagagagagatgggccca 6607958  T
Q  200 atcctctactgcagttaa 217  Q
    |||||||||| |||||||    
T  6607957 atcctctactacagttaa 6607940  T

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Target: chr7; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 6625951 - 6626160
Alignment:
Q  1 cgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6625951 cgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatgggtgaa 6626050  T
Q  101 aggggagaatcgaagatcgacgacggcgacggggaaatctcgtgaggggctagagttgggagaaaagggaaatggcatgggagagaaagagatggg-ccg 199  Q
    |||||||||||||| ||||||||||||      |||||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||| ||     
T  6626051 aggggagaatcgaatatcgacgacggc------gaaatctcgtgaggtgctagggttgggagaaaagggaaatggcatgggagag--agagatgggccca 6626142  T
Q  200 atcctctactgcagttaa 217  Q
    |||||||||| |||||||    
T  6626143 atcctctactacagttaa 6626160  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 6626648 - 6626720
Alignment:
Q  287 attaaatgtgccacacaagagggatgtatgagtggtatgccagctatggaggtatgtgtatcagtgctcttta 359  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6626648 attaaatgtgctacacaagaggggtgtatgagtggtatgccagctatggagatatgtgtatcagtgctcttta 6626720  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 6607568 - 6607502
Alignment:
Q  287 attaaatgtgccacacaagagggatgtatgagtggtatgccagctatggaggtatgtgtatcagtgctcttt 358  Q
    ||||||||||| ||||||||||| ||||||     |||||||||||||||||||||||||||||||||||||    
T  6607568 attaaatgtgctacacaagaggggtgtatg-----tatgccagctatggaggtatgtgtatcagtgctcttt 6607502  T

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Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 356 - 549
Target Start/End: Complemental strand, 17312554 - 17312361
Alignment:
Q  356 tttagaaagagaacgcgtcaaccgttttatttttgttcaatcataaccgtccaagtttccaccacacgcgttatcgtagtcgtcaaacctgaccctacgc 455  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17312554 tttagaaagagaacgcgtcaaccgttttattttagttcaatcataaccgtccaagtttccaccacacgcgttatcgtagccgtcaaacctgaccctacgc 17312455  T
Q  456 actatataaacctcacaagttccctctttccaaagtgcctcgaaataacgcgttctacgttcctctcgtttgttccgtctttctctcctttctt 549  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |  ||||| |||| |||||||||||||||  |||||||||||||||||    
T  17312454 actatataaacctcacaagttccctctttccaaagtgcatcgaaacagagcgttttacgctcctctcgtttgttctctctttctctcctttctt 17312361  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 356 - 557
Target Start/End: Complemental strand, 17259934 - 17259735
Alignment:
Q  356 tttagaaagagaacgcgtcaaccgttttatttttgttcaatcataaccgtccaagtttccaccacacgcgttatcgtagtcgtcaaacctgaccctacgc 455  Q
    |||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |    
T  17259934 tttagaaaggaaacgcgttaaccgttttattttagttcaatcataaccgtccaagtttccaccacacgcgttatcgtagccgtcaaacttgaccccaccc 17259835  T
Q  456 actatataaacctcacaagttccctctttccaaagtgcctcgaaataacgcgttctacgttcctctcgtttgttccgtctttctctcctttcttcttctt 555  Q
     |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||||||||||||||    
T  17259834 tctatataagcctcataagttccctctttccaaagtgcctcgaaatagcgcgttctacgttcctctcgtttgttc--tctctttctcctttcttcttctt 17259737  T

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Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 356 - 549
Target Start/End: Complemental strand, 17335816 - 17335623
Alignment:
Q  356 tttagaaagagaacgcgtcaaccgttttatttttgttcaatcataaccgtccaagtttccaccacacgcgttatcgtagtcgtcaaacctgaccctacgc 455  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  | |    
T  17335816 tttagaaagagaacgcgtcaaccgtttaattttagttcaatcataaccgtccaagtttccaccacacgcgttatcgtagccgtcaaacttgacccctccc 17335717  T
Q  456 actatataaacctcacaagttccctctttccaaagtgcctcgaaataacgcgttctacgttcctctcgtttgttccgtctttctctcctttctt 549  Q
     |||||||| ||||| ||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||  |||||||||||||||||    
T  17335716 tctatataagcctcataagttccgtctttccaaagtgcctcgaaatagcgcattctacgctcctctcgtttgttctctctttctctcctttctt 17335623  T

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Target: chr1 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 29495084 - 29494901
Alignment:
Q  2 gtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaaa 101  Q
    ||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  29495084 gtcggcgagcgtgctacggttgaaagaaaaccggcgacgagagagagcacaaatagataataatggagacacaatggatttcaatcagcgacgggtgaaa 29494985  T
Q  102 ggggagaatcgaagatcgacgacggcgacggggaaatctcgtgaggggctagagttgggagaaaagggaaatggcatgggagag 185  Q
    ||||||| ||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29494984 ggggagagtcgaagatcgacggcggcgacggtgaaatctcgcgaggtgctagagttgggagaaaagggaaatggcatgggagag 29494901  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 29494805 - 29494735
Alignment:
Q  287 attaaatgtgccacacaagagggatgtatgagtggtatgccagctatggaggtatgtgtatcagtgctcttt 358  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||||||    
T  29494805 attaaatgtgccacacaagaggg-tgtatgagtggtatgccacctatggtggtatgggtatcagtgctcttt 29494735  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 9793660 - 9793774
Alignment:
Q  6 gcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaaagggg 105  Q
    ||||||||||||| |||||||||||||||| | | ||||||||||||||   | |||||||||||| | ||| ||||||||||||| | |||||||||||    
T  9793660 gcgagggtgctacggttgaaagaaaaccgctggcgagagagagcacaaaggaagaataatggagacgcgatggatttcaatcagcgacaggtgaaagggg 9793759  T
Q  106 agaatcgaagatcga 120  Q
    || ||||| ||||||    
T  9793760 aggatcgatgatcga 9793774  T

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