View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_80 (Length: 252)

Name: NF12023_low_80
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_low_80
NF12023_low_80
[»] chr1 (2 HSPs)
chr1 (11-252)||(5333809-5334064)
chr1 (120-192)||(17010879-17010952)
[»] chr6 (3 HSPs)
chr6 (13-181)||(14637783-14637950)
chr6 (127-196)||(26339383-26339453)
chr6 (120-188)||(15669562-15669631)
[»] chr7 (2 HSPs)
chr7 (67-201)||(9792459-9792592)
chr7 (127-201)||(28106885-28106960)
[»] chr4 (2 HSPs)
chr4 (120-196)||(44742537-44742614)
chr4 (120-196)||(13089644-13089721)
[»] chr8 (2 HSPs)
chr8 (40-168)||(24955119-24955245)
chr8 (127-201)||(24970867-24970942)
[»] chr5 (2 HSPs)
chr5 (67-188)||(29963912-29964032)
chr5 (67-188)||(30010766-30010886)
[»] chr3 (1 HSPs)
chr3 (120-196)||(36330676-36330753)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 5333809 - 5334064
Alignment:
Q  11 caaaggtgcagaagctgatagaaatgctaaaaagttgttccaaagttcaatttcacatcttatttttaaaattatttttgttggatttccttctttacnn 110  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      
T  5333809 caaaggtgcagaagctgatataaatgctgaaaagttgttccaaagttcaatttcacatcttatttttaaaatcatttttgttggatttccttctttac-- 5333906  T
Q  111 nnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttcttttagaagtaaaagataagtgaaaaataaagagg--------- 201  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||             
T  5333907 aaaaaagtaacttattttattaagagttttactaaaattatgtttggctccacttctcttagaagtaaaagattagtgaaaaataaagaggaccaaacat 5334006  T
Q  202 -------tttgtatttttatatccatattcaatgccctaagttaatggttaacttatc 252  Q
            || ||||||||||||| |||||||||||||||||||||||||||||||||    
T  5334007 actataaattctatttttatatccttattcaatgccctaagttaatggttaacttatc 5334064  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 17010952 - 17010879
Alignment:
Q  120 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaa 192  Q
    |||| |||||||||||  || | ||||||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  17010952 acttcttttattaagaacttaattaaaattgtgtttggccccacttcttcttagaagtagaagataagtgaaaa 17010879  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 14637783 - 14637950
Alignment:
Q  13 aaggtgcagaagctgatagaaatgctaaaaagttgttccaaagttcaatttcacatcttatttttaaaattatttttgttggatttccttctttacnnnn 112  Q
    |||||||||||||||||| || ||  |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||        
T  14637783 aaggtgcagaagctgatataagtgtcaaaaagttgttctaaagttcaatttcacatcttatttttaaagtcatttttgttggatttccttctttac--aa 14637880  T
Q  113 nnnngtaacttattttattaagagttttactaaaattatgtttggctccacttct-tttagaagtaaaag 181  Q
        || ||||||||||||||||  ||||||||||||||||||||| ||||||||  |||||||||||||    
T  14637881 aaacgtcacttattttattaagaactttactaaaattatgtttggccccacttctccttagaagtaaaag 14637950  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 26339383 - 26339453
Alignment:
Q  127 ttattaagagttttactaaaattatgtttggctccacttct-tttagaagtaaaagataagtgaaaaataa 196  Q
    |||||||||| ||||  ||||||||||||||| |||||||| |||| ||||||||||||| || |||||||    
T  26339383 ttattaagagctttatcaaaattatgtttggccccacttctctttaaaagtaaaagataaatggaaaataa 26339453  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 15669562 - 15669631
Alignment:
Q  120 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtg 188  Q
    |||||||||||||||| ||| | ||||||| |||||| | ||||||||| ||||||||| ||||||||||    
T  15669562 acttattttattaagaatttaattaaaattgtgtttgaccccacttcttcttagaagtagaagataagtg 15669631  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 9792459 - 9792592
Alignment:
Q  67 atcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttc 166  Q
    |||||||||| ||| | |||||||||||||||||||||||||        || |||| |||||||||||| |||| ||||||| |||||||| |||||||    
T  9792459 atcttattttcaaagtcatttttgttggatttccttctttacaaaaaa--gtcacttcttttattaagagctttattaaaattgtgtttggccccacttc 9792556  T
Q  167 tt-ttagaagtaaaagataagtgaaaaataaagagg 201  Q
    || ||| |||||||||||||||| ||||||| ||||    
T  9792557 ttcttaaaagtaaaagataagtggaaaataaggagg 9792592  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 28106960 - 28106885
Alignment:
Q  127 ttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataaagagg 201  Q
    |||||||||  |||| ||||||||||||||| || ||||||| ||||||||| |||| ||||| ||||||| ||||    
T  28106960 ttattaagaactttattaaaattatgtttggttctacttcttcttagaagtagaagagaagtggaaaataaggagg 28106885  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 44742614 - 44742537
Alignment:
Q  120 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataa 196  Q
    ||||||||||||||||| |||| ||||||| |||||||| ||||||||| ||||||||| |||| |||||||||||||    
T  44742614 acttattttattaagagctttattaaaattgtgtttggccccacttcttcttagaagtagaagagaagtgaaaaataa 44742537  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 13089721 - 13089644
Alignment:
Q  120 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataa 196  Q
    ||||||||||||||||| |||  ||||||| |||||| | ||||||||| ||||||||| |||| |||||||||||||    
T  13089721 acttattttattaagagctttgttaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtgaaaaataa 13089644  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 24955245 - 24955119
Alignment:
Q  40 aaaagttgttccaaagttcaatttcacatcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttt 139  Q
    |||||||||| ||||||||| |||| ||||||||||||||| ||| |||| |||| ||| ||||||||         || ||||||||||||||||| ||    
T  24955245 aaaagttgtttcaaagttcactttcccatcttatttttaaagttacttttattggtttttcttcttta--taaaaaagttacttattttattaagagctt 24955148  T
Q  140 tactaaaattatgtttggctccacttctt 168  Q
    || |||||||||||||||| | |||||||    
T  24955147 tattaaaattatgtttggccctacttctt 24955119  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 24970942 - 24970867
Alignment:
Q  127 ttattaagagttttactaaaattatgtttggctccacttct-tttagaagtaaaagataagtgaaaaataaagagg 201  Q
    |||||||||  |||| |||||||||||||||| | |||||| |||||||||| |||| ||||||||||||| ||||    
T  24970942 ttattaagaactttattaaaattatgtttggccctacttctctttagaagtagaagagaagtgaaaaataaggagg 24970867  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 29964032 - 29963912
Alignment:
Q  67 atcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttc 166  Q
    |||||||||| ||| | | |||||||||||||||||||||||        || |||| | |||||||||| ||||  ||||||||||||||| |||||||    
T  29964032 atcttattttcaaagtcacttttgttggatttccttctttacaaaaaa--gtcacttctattattaagagctttatcaaaattatgtttggccccacttc 29963935  T
Q  167 t-tttagaagtaaaagataagtg 188  Q
    | |||||||||||||||||||||    
T  29963934 tctttagaagtaaaagataagtg 29963912  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 30010766 - 30010886
Alignment:
Q  67 atcttatttttaaaattatttttgttggatttccttctttacnnnnnnnngtaacttattttattaagagttttactaaaattatgtttggctccacttc 166  Q
    |||||||||| ||| | | |||||||||||||||||||||||        || |||| | |||||||||| ||||  ||||||||||||||| |||||||    
T  30010766 atcttattttcaaagtcacttttgttggatttccttctttacaaaaaa--gtcacttctattattaagagctttatcaaaattatgtttggccccacttc 30010863  T
Q  167 t-tttagaagtaaaagataagtg 188  Q
    | |||||||||||||||||||||    
T  30010864 tctttagaagtaaaagataagtg 30010886  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 36330753 - 36330676
Alignment:
Q  120 acttattttattaagagttttactaaaattatgtttggctccacttctt-ttagaagtaaaagataagtgaaaaataa 196  Q
    |||||||||||||| || |||| ||||||| |||||| | ||||||||| ||||||||| |||| ||||| |||||||    
T  36330753 acttattttattaaaagctttattaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtggaaaataa 36330676  T

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