View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_81 (Length: 251)
Name: NF12023_low_81
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 35321680 - 35321435
Alignment:
| Q |
1 |
aaaatagtctgcaactgcaatagcggccttgaccatgagactttttatgtctccgctataataaatccgatcacatcgattcgaccacaatattttgaga |
100 |
Q |
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|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35321680 |
aaaatattctgcaaccgcaatagcggctgtgaccatgagactttttatgtctccgcgataataaatccgatcacatcgattcgaccacaatattttgaga |
35321581 |
T |
|
| Q |
101 |
tatcaaaattacgatgtgaccacaatttaaaaccttgatttgattttaacaatatagaataannnnnnncttatatctgggaggtgtgacctcacctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35321580 |
tatcaaaattacgatgtgaccacaatttaaaaccttgatttgattttaacaatatagaataatttatttcttatatctgggaggtgtgacctcacctgaa |
35321481 |
T |
|
| Q |
201 |
tgacatgatttttgaagctgacattctctttctcctctctgcttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35321480 |
tgacatgatttttgaagctgacattctctttctcctttctgcttct |
35321435 |
T |
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