View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_low_83 (Length: 250)
Name: NF12023_low_83
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_83 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 9529913 - 9529678
Alignment:
| Q |
14 |
agacattaccaaacagaacaccgcaaacatcgctgtagcacgtgggtctctccaactaaacaaagcttccaatctctcaccctgtgctgcaacgtcgcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9529913 |
agacattaccaaacagaacaccgcaaacatcgctgtagcacgtgggtctctccaactaaacaaagcttccaatctctcaccctgtgctgcaacgtcgcca |
9529814 |
T |
|
| Q |
114 |
atcaaactttgtgccctccccgcaagagcacgcaccctgtcgtacctgattcgaaccacttccacagacctcattgttggaaacccatcaaactcttcgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9529813 |
atcaaactttgtgccctccccgcaagagcacgcaccctgtcgtacctgattcgaaccacttccacagacctcattgttggaaacccatcaaactcttcgt |
9529714 |
T |
|
| Q |
214 |
caagttcatccaaacttaccatgtccacgtaggaca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9529713 |
caagttcatccaaacttaccatgtccacgtaggaca |
9529678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University