View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_84 (Length: 250)
Name: NF12023_low_84
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37836312 - 37836550
Alignment:
| Q |
1 |
aatgaaaataatttcaccgggtctcttcctgattttgaaagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccat |
100 |
Q |
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| T |
37836312 |
aatgaaaataatttcaccgggtctcttcctgattttgagagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccat |
37836411 |
T |
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| Q |
101 |
caagtttgggaaattgcaaatatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagttaggtaaacttgtgagtcttgt |
200 |
Q |
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| T |
37836412 |
caagtttgggaaattgcaaaaatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagttaggtaagcttgtgagtcttgt |
37836511 |
T |
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| Q |
201 |
gattttggatctttctcaaaacaacttggaaggtccttt |
239 |
Q |
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| T |
37836512 |
gattttggatctttctcacaacaacttggaaggtccttt |
37836550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37849687 - 37849924
Alignment:
| Q |
1 |
aatgaaaataatttcaccgggtctcttcctgattttgaaagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccat |
100 |
Q |
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| T |
37849687 |
aatgaaaataatttcaccgggtctcttcccgattttgaaagtaatttgaacctgaaatacatggacatgagtaagaacaaaatcagtggacggattccat |
37849786 |
T |
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| Q |
101 |
caagtttgggaaattgcaaatatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagttaggtaaacttgtgagtcttgt |
200 |
Q |
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| T |
37849787 |
caagtttgggaaattgcacaaatcttacatacattaatttgtcaaggaacaaatttgcacggctcataccatcacagctgggaaaccttgtaaaccttgt |
37849886 |
T |
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| Q |
201 |
gattttggatctttctcaaaacaacttggaaggtcctttgc |
241 |
Q |
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| T |
37849887 |
gattttggatctttct---aacaacttggaaggtccattgc |
37849924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 37841935 - 37842167
Alignment:
| Q |
5 |
aaaataatttcaccgggtctcttcctgattttgaaagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccatcaag |
104 |
Q |
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| T |
37841935 |
aaaataatttcaccgggtcgcttcctgattttgcaagtaatcttaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgag |
37842034 |
T |
|
| Q |
105 |
tttgggaaattgcaaatatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagttaggtaaacttgtgagtcttgtgatt |
204 |
Q |
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| T |
37842035 |
tttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcacgacttataccatcagagttgggaaacctattgaatcttgtgatt |
37842134 |
T |
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| Q |
205 |
ttggatctttctcaaaacaacttggaaggtcct |
237 |
Q |
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| T |
37842135 |
ttggaactttctcacaacaacttggaaggtcct |
37842167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 37830612 - 37830848
Alignment:
| Q |
5 |
aaaataatttcaccgggtctcttcctgattttgaaagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccatcaag |
104 |
Q |
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|||||||||||||||||| ||||| ||||||| ||||||| | |||||||| ||||||||| | ||||| |||||||| |||||||| || ||||||| |
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| T |
37830612 |
aaaataatttcaccgggttgcttcccgattttgcaagtaatcttaacctgaaatacatggacataagcaaaaacaatattggtggaccaattacatcaag |
37830711 |
T |
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| Q |
105 |
tttgggaaattgcaaatatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagttaggtaaacttgtgagtcttgtgatt |
204 |
Q |
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| T |
37830712 |
tttgggaaattgcacaaatctcgcatacattaatttgtcaagaaacaaatttgcaggactcataccattacagcttggaaaccttgtgaatcttgtgatt |
37830811 |
T |
|
| Q |
205 |
ttggatctttctcaaaacaacttggaaggtcctttgc |
241 |
Q |
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||||||||| |||| || || |||||||||||||||| |
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| T |
37830812 |
ttggatcttgctcacaataatttggaaggtcctttgc |
37830848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36865063 - 36865303
Alignment:
| Q |
1 |
aatgaaaataatttcaccgggtctcttcctgattttgaaagtaatttgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||| |||| ||||||| | |||| |
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| T |
36865063 |
aatgaaaataatttcaccgggtctcttcccgattttgaaagtaatatgaacctgaaatacatggacatgagcaagaacagtatcggtggaccgataccat |
36865162 |
T |
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| Q |
101 |
caagtttgggaaattgcaaatatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagttaggtaaacttgtgagtcttgt |
200 |
Q |
| |
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||||||||||||||| || |||| ||||||| ||||||||| || ||||| ||||||||||||||| | |||| | || || ||||||| |||||| |
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| T |
36865163 |
caagtttgggaaattacactaatcttacatacattaatttgtcaagcaacaaatttgcagggctcataccattagagctgggaaaccttgtgaatcttgt |
36865262 |
T |
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| Q |
201 |
gattttggatctttctcaaaacaacttggaaggtcctttgc |
241 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| |
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| T |
36865263 |
gattttggatctttctcacaacaacttggaaggtccattgc |
36865303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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