View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_85 (Length: 249)
Name: NF12023_low_85
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30882581 - 30882803
Alignment:
| Q |
1 |
ccacactgataaaacgccacagctctgctattcttgaaaaatttgctgtggtggttgtnnnnnnnttctccaccgcgatatgcaatggtgccgtcatggc |
100 |
Q |
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| T |
30882581 |
ccacactgataaaacgccacagctctgctattcttgaaaaatttgctgtggtggttgtaaaaaaattctccaccgcaatatgcaatggtgccgtcatggc |
30882680 |
T |
|
| Q |
101 |
tacatattagagtttgcatagacacctctaagattaggtgtgtcgcggtgtcggacacacatcggtgtctgacactcgtacgacgcatgttggactaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30882681 |
tacatattagagtttgcatagacacctctaagattaggcgtgtcgcggtgtcggacacacatcggtgtctgacactcgtacgacacatgttggactaact |
30882780 |
T |
|
| Q |
201 |
caaatcggtgtcccaaaaattag |
223 |
Q |
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|||||| |||||||||||||||| |
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| T |
30882781 |
caaatccgtgtcccaaaaattag |
30882803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 17831481 - 17831529
Alignment:
| Q |
128 |
ctaagattaggtgtgtcgcggtgtcggacacacatcggtgtctgacact |
176 |
Q |
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| T |
17831481 |
ctaagattaggcgtgtcccggtgtcggacacatgtcggtgtccgacact |
17831529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 5938575 - 5938531
Alignment:
| Q |
131 |
agattaggtgtgtcgcggtgtcggacacacatcggtgtctgacac |
175 |
Q |
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| T |
5938575 |
agattaggtgtgttccggtgtcggacacgcatcggtgtctgacac |
5938531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 2419963 - 2419920
Alignment:
| Q |
132 |
gattaggtgtgtcgcggtgtcggacacacatcggtgtctgacac |
175 |
Q |
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| T |
2419963 |
gattaggtgtgtcccggggtcggacacgcatcggtgtctgacac |
2419920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 879842 - 879894
Alignment:
| Q |
132 |
gattaggtgtgtcgcggtgtcggacacacatcggtgtctgacactcgtacgac |
184 |
Q |
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| T |
879842 |
gattaggtgtgtcgcagtgtccgacacatgttggtgtttgacactcgtacgac |
879894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 41849408 - 41849352
Alignment:
| Q |
121 |
gacacctctaagattaggtgtgtcgcggtgtcggacacacatcggtgtctgacactc |
177 |
Q |
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|||||||||| |||||| ||||||||||||| ||||| | |||||||| ||||||| |
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| T |
41849408 |
gacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactc |
41849352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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