View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_9 (Length: 563)
Name: NF12023_low_9
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Original strand, 14073780 - 14074321
Alignment:
| Q |
18 |
aatcatggttcgtaaaagtcaaattttatgagtgtttgtgttgtagttgtgtgttctgttcttctttaaggtactaactattttaagcattgcattttgt |
117 |
Q |
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| T |
14073780 |
aatcatggttcgtaaaagtcaaattttatgagtgtttggattgtaactgtttgttctgttgttctttaatgtactaactattttaagcattgtattttgt |
14073879 |
T |
|
| Q |
118 |
taccatcaacatttgcatttgattttaatctaagcagaatt--ttggtcaacc--tttggatttttgctctatgatttagactgtacgtatcaaagttat |
213 |
Q |
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|||||| |||||||| ||||||||| |||||||| |||||| || ||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14073880 |
taccataaacatttgtatttgatttgaatctaagtagaattcttttttcagacaatttagatttttgctctatgatttagactgtacgtatcaaagttat |
14073979 |
T |
|
| Q |
214 |
tagtaaaagctaaaattgatagtcttcaattacatggactccttaagatatatgattgggagactgagttgtgtgttctattggtttctccttgttaggt |
313 |
Q |
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| T |
14073980 |
tagtaaaagctaaaattgatagttttcaattacatggactccttaagatat--gattgggtgactgaattgtgtgttctgttggtttctctttgttaggt |
14074077 |
T |
|
| Q |
314 |
tttaatctagttgctgctatact---gcatgcatttaatagtgtttttgctgtaacttattcttatcaaacattacatttagtgaaagtaaagtaagtgt |
410 |
Q |
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| T |
14074078 |
tttaatcaagttgatgcgctacttttgcatgcatttagtagtgtttttgttgtaacttattcttatcaaacattacaattagtgaaagtaaagtaagtgt |
14074177 |
T |
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| Q |
411 |
agtattaattaattgcatttcttgatactataattaattatatttgggtcaaatacttaacatgaatctgtttacnnnnnnnntgttgagacacttgatg |
510 |
Q |
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| T |
14074178 |
agtattaattaattgtatttcttgatactataattaattacatttgtgtcaaatacttaacatgaatctgtttacaaaaaaaatgttgagacactt-atg |
14074276 |
T |
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| Q |
511 |
tttgagaagatgaaattctccacaaatttgatgtttattctcatt |
555 |
Q |
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| T |
14074277 |
tttgagaagatgaaattctccacgaatttgatgtttattctcatt |
14074321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 36 - 555
Target Start/End: Original strand, 14071011 - 14071530
Alignment:
| Q |
36 |
tcaaattttatgagtgtttgtgttgtagttgtgtgttctgttcttctttaaggtactaactattttaagcattgcattttgttaccatcaacatttgcat |
135 |
Q |
| |
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| T |
14071011 |
tcaaattttatgagtgtttgggttgtaattgtttgttctgtttttctttaaggtactaactattttaagcattgtattttgttaccataaacatttgtat |
14071110 |
T |
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| Q |
136 |
ttgattttaatctaagcagaatt--ttggtca--acctttggatttttgctctatgatttagactgtacgtatcaaagttattagtaaaagctaaaattg |
231 |
Q |
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| T |
14071111 |
ttgatttgaatctaagtagaattcttttttcaggaaatttggatttttgctctatgatttagactatacgtatcaaacttattcgtaaaagctaaaattg |
14071210 |
T |
|
| Q |
232 |
atagtcttcaattacatggactccttaagatatatgattgggagactgagttgtgtgttctattggtttctccttgttaggttttaatctagttgctgct |
331 |
Q |
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| T |
14071211 |
atagttttcaactacatggactccttaagatat--gattaggagactgagttgtgtgttctattggtttctctttgttagattttaatctagttgctgct |
14071308 |
T |
|
| Q |
332 |
atact---gcatgcatttaatagtgtttttgctgtaacttattcttatcaaacattacatttagtgaaagtaaagtaagtgtagtattaattaattgcat |
428 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
14071309 |
atacttttgcatgcatttaatagtgtttttgctttaac-----cttatcaaacattacaattagtgaaagtaaagtaaatgtagtattaattaattgcat |
14071403 |
T |
|
| Q |
429 |
ttcttgatactataattaattatatttgggtcaaatacttaacatgaatctgtttacnnnnnnnntgttgagacacttgatgtttgagaagatgaaattc |
528 |
Q |
| |
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| T |
14071404 |
ttcttgatactataattaattacatttgtgtcaaatacttaacatgaatctgtttacaaaaaaaatgttgagacacttgatgtttgagaagatgaaattc |
14071503 |
T |
|
| Q |
529 |
tccacaaatttgatgtttattctcatt |
555 |
Q |
| |
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| T |
14071504 |
ttcacgaatttgatgttttttctcatt |
14071530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 28 - 326
Target Start/End: Original strand, 14069431 - 14069728
Alignment:
| Q |
28 |
cgtaaaagtcaaattttatgagtgtttgtgttgtagttgtgtgttctgttcttctttaaggtactaactattttaagcattgcattttgttaccatcaac |
127 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
14069431 |
cgtaaaagtcaaattttatgagtgtttgtgttgtagttgtgtgttctgttcttatttaaggtactaactattttaagcattgcattttgttacaataaac |
14069530 |
T |
|
| Q |
128 |
atttgcatttgattttaatctaagcagaattttggtcaacctttggatttttgctctatgatttagactgtacgtatcaaagttattagtaaaagctaaa |
227 |
Q |
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| T |
14069531 |
atttgcatttaatttgaatctaagtagaattttagtcaacctttgaatttttgctctatgatttagattgtatgtatcaaatttattagtagaagttaaa |
14069630 |
T |
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| Q |
228 |
attg-atagtcttcaattacatggactccttaagatatatgattgggagactgagttgtgtgttctattggtttctccttgttaggttttaatctagttg |
326 |
Q |
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| T |
14069631 |
actgaatagttttcaattacttggactccttaag--atatgattaggagaatgggttgtgtgttttattggtttctctttgttaggtgttaatctagttg |
14069728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 338 - 555
Target Start/End: Original strand, 14070389 - 14070606
Alignment:
| Q |
338 |
catgcatttaatagtgtttttgctgtaacttattcttatcaaacattacatttagtgaaagtaaagtaagtgtagtattaattaattgcatttcttgata |
437 |
Q |
| |
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|||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| ||||||||||| |
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| T |
14070389 |
catgtatttagtagtgtttttattgtaacttattcttatcaaacattacaattagtaaaagtgaactaagtgtagtattaattaattggatttcttgata |
14070488 |
T |
|
| Q |
438 |
ctataattaattatatttgggtcaaatacttaacatgaatctgtttacnnnnnnnntgttgagacacttgatgtttgagaagatgaaattctccacaaat |
537 |
Q |
| |
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|||||||||||| |||||||||||||||||| || |||| |||| | ||||||||||||||||| | |||||||||||||||||| ||| |
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| T |
14070489 |
ctataattaatttcatttgggtcaaatacttatcaagaatttgttgatgaataaaactttgagacacttgatgttggcgaagatgaaattctccacgaat |
14070588 |
T |
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| Q |
538 |
ttgatgtttattctcatt |
555 |
Q |
| |
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| T |
14070589 |
ttgatgtttattctcatt |
14070606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 12885256 - 12885164
Alignment:
| Q |
97 |
attttaagcattgcattttgttaccatcaacatttgcatttgattttaatctaagcagaattttggtcaacctttggatttttgctctatgatt |
190 |
Q |
| |
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||||||||||||| |||||| ||| || ||||| || |||||||| |||||||| ||||| | |||| ||||||||||||| |||||||||| |
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| T |
12885256 |
attttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaatcat-gtcagcctttggattttttctctatgatt |
12885164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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