View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_95 (Length: 239)
Name: NF12023_low_95
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_95 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35321715 - 35321940
Alignment:
| Q |
1 |
cattgatggtttaatttcattttgtgcagtggtttgaagtgttggaaggtttacttggtccttattggaaagcaattggattagctttcaactgcacttt |
100 |
Q |
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| T |
35321715 |
cattgatggtttaatttcattttgtgcagtggtttgaagtgttggaaggtttacttggtccttattggaaagcaattggattagctttcaactgcacttt |
35321814 |
T |
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| Q |
101 |
ccttctctttggatctgttatccagctcatagcttgtgcaaggtacaaatttca---nnnnnnnnnataacattaatttatttgattagataattgatgg |
197 |
Q |
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| T |
35321815 |
ccttctctttggatctgttatccagctcatagcttgtgcaaggtacaaatttcatttttttttcttataacattaatttatttgattagataattgaagg |
35321914 |
T |
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| Q |
198 |
accatattgaattgtggacttaataa |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35321915 |
accatattgaattgtggacttaataa |
35321940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 24626990 - 24627108
Alignment:
| Q |
27 |
cagtggtttgaagtgttggaaggtttacttggtccttattggaaagcaattggattagctttcaactgcactttccttctctttggatctgttatccagc |
126 |
Q |
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| T |
24626990 |
cagtggtttgaagtgcttgatgggttactgggtccatattggaaagcattggggctagctttcaattgtactttcctcctctttggatctgtgattcagc |
24627089 |
T |
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| Q |
127 |
tcatagcttgtgcaaggta |
145 |
Q |
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| T |
24627090 |
ttatagcctgtgctaggta |
24627108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 4532736 - 4532818
Alignment:
| Q |
63 |
tattggaaagcaattggattagctttcaactgcactttccttctctttggatctgttatccagctcatagcttgtgcaaggta |
145 |
Q |
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| T |
4532736 |
tattggaaagcattggggttagccttcaattgcacttttcttctctttggatctgtcattcagcttatagcatgtgcaaggta |
4532818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 28004380 - 28004432
Alignment:
| Q |
93 |
tgcactttccttctctttggatctgttatccagctcatagcttgtgcaaggta |
145 |
Q |
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| T |
28004380 |
tgcacatttcttctgtttggatctgttatccaacttatagcttgtgcaaggta |
28004432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 32804367 - 32804309
Alignment:
| Q |
86 |
tttcaactgcactttccttctctttggatctgttatccagctcatagcttgtgcaaggt |
144 |
Q |
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||||||||||||||||||| | |||||||| || || ||||| || ||||||||||||| |
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| T |
32804367 |
tttcaactgcactttccttttgtttggatcagtaattcagctaattgcttgtgcaaggt |
32804309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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