View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_99 (Length: 238)
Name: NF12023_low_99
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41984923 - 41985145
Alignment:
| Q |
1 |
cccttccccaccctccttccacatcaccactgccatccaaaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtatta |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41984923 |
cccttccccaccctcctcccacatcaccactgccatccaaaatcaaatacacatatttttgaaaatgtattcttgatgataataagaaagtgttgtatta |
41985022 |
T |
|
| Q |
101 |
gatttacttgaaaatgggttgatgattatgagaagctttatggattgtgtggctaccgcttcaacctcaagtattacctgtgggcacttgtatttcatac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
41985023 |
gatttacttgaaaatgagttgatgattatgagaagctttatggattgtgtggctaccgcttcaacctcaactattacatgtgggcacttgtatttcatac |
41985122 |
T |
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| Q |
201 |
cagcaggaggctgaataaccttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41985123 |
cagcaggaggctgaataaccttt |
41985145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 26470475 - 26470635
Alignment:
| Q |
1 |
cccttccccaccctccttccacatcaccactgccatccaaaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtatta |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26470475 |
cccttccccaccctcctcccacatcaccactgccatccaaaatcaaatacacatatttttgaaaatgtattgttgatgataataagaaagtgttgtatta |
26470574 |
T |
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| Q |
101 |
gatttacttgaaaatgggttgatgattatgagaagctttatggattgtgtggctaccgctt |
161 |
Q |
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| T |
26470575 |
gatttacttgaaaatgggttgatgattatgagaagctttatggattgtgtggctaccgctt |
26470635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 46757226 - 46757069
Alignment:
| Q |
4 |
ttccccaccctccttccacatcaccactgccatccaaaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagat |
103 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46757226 |
ttccccaccctcctcccaaatcaccactgccatccaaaatcaaatacacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagat |
46757127 |
T |
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| Q |
104 |
ttacttgaaaatgggttgatgattatgagaagctttatggattgtgtggctaccgctt |
161 |
Q |
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| T |
46757126 |
ttacttgaaaatgggttgatgattatgagaagctttatggattgtgtggctaccgctt |
46757069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36957257 - 36957417
Alignment:
| Q |
1 |
cccttccccaccctccttccacatcaccactgccatccaaaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtatta |
100 |
Q |
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|
||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36957257 |
cccttccccaccctcctcccacaataccactgccatccaaaatcaaatacacatatttttgaaaatgtattgttgatgataataagaaagtgttgtatta |
36957356 |
T |
|
| Q |
101 |
gatttacttgaaaatgggttgatgattatgagaagctttatggattgtgtggctaccgctt |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36957357 |
gatttacttgaaaatgggttgatgattatgagaagctttatggattgcgtggctaccgctt |
36957417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 43016763 - 43016821
Alignment:
| Q |
165 |
cctcaagtattacctgtgggcacttgtatttcataccagcaggaggctgaataaccttt |
223 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016763 |
cctcaactattacctgtgggcacttgtatttcataccagcaggaggctgaataaccttt |
43016821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 620010 - 620067
Alignment:
| Q |
71 |
tgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatg |
130 |
Q |
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| T |
620010 |
tgttgatgataataaaaaagtatt--atgagatttagttgaaaatgggttgatgattatg |
620067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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