View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12024_high_11 (Length: 312)

Name: NF12024_high_11
Description: NF12024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12024_high_11
NF12024_high_11
[»] chr8 (1 HSPs)
chr8 (29-312)||(26561873-26562156)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 312
Target Start/End: Original strand, 26561873 - 26562156
Alignment:
Q  29 acataacagcagaagcaatagtgatcttgaaacaaggccatatccctatgaaagctctcctagagaaacctgtccaactttccttacaagatggacttag 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26561873 acataacagcagaagcaatagtgatcttgaaataaggccatatccctatgaaagctctcctagagaaacctgtccaactttccttacaagatggacttag 26561972  T
Q  129 aagaatataaagtccattcattaatgcaaaaacccaccaagaaaaactgagtgtcaaagcagcttcaaaaactccatagcccaaaacataaatcacaacc 228  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26561973 aagaatataaaatccattcattaatgcaaaaacccaccaagaaaaactgagagtcaaagcagcttcaaaaactccatagcccaaaacataaatcacaacc 26562072  T
Q  229 caattgagtaatatgtgcaagcaaaacactccaaacaccatgtatgcaagagggttaactatgttttgagcttggaggaatctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26562073 caattgagtaatatgtgcaagcaaaacactccaaacaccatgtatgcaagagggttaactatgttttgagcttggaggaatctt 26562156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University