View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12024_high_1_N (Length: 437)
Name: NF12024_high_1_N
Description: NF12024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12024_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 408
Target Start/End: Complemental strand, 9333589 - 9333203
Alignment:
| Q |
25 |
atcatcatagaaataatgaacaaataaaacttttatctttagctacaataatctgctacaatttacatacaaacatatat------catccattagaaaa |
118 |
Q |
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| T |
9333589 |
atcatcatagaaataatgaacaaataaaacttttatctttagctacaataatctgctacaatttacatacaaacatatatatatatcatccattagaaaa |
9333490 |
T |
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| Q |
119 |
tagtggatgaaaacatactataacaccaaaaatatataagtatgctactacaatttacatacaaactaataataattttctaataaatcttaataaatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9333489 |
tagtggatgaaaacatactataacaccaaaaatatataagtatgctac---aatttacatacaaactaataataattttctaataaatcttaataaatgt |
9333393 |
T |
|
| Q |
219 |
attcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtcttctatttccaaattcatcctttcttttacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9333392 |
attcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtcttctatttccaaattcatcctttcttttacc |
9333293 |
T |
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| Q |
319 |
atgaattcttctcctttataaaatgaatcttccccaatacttaatccagtaacattttcctattattgagaaaagctataataagttaga |
408 |
Q |
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| T |
9333292 |
atgaattcttctcctttatcaaatgaatcttccccaatacttaatccagtaacattttcctattattgagaaaagctataataagttaga |
9333203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 189 - 408
Target Start/End: Complemental strand, 9335219 - 9335000
Alignment:
| Q |
189 |
aataattttctaataaatcttaataaatatattcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtct |
288 |
Q |
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| T |
9335219 |
aataattttctaataaatcataaagaaattatgcatcactcaaactcttcctggtaccttaggatcatggtggttgtttgctcctgtccctggatagtct |
9335120 |
T |
|
| Q |
289 |
tctatttccaaattcatcctttcttttaccatgaattcttctcctttataaaatgaatcttccccaatacttaatccagtaacattttcctattattgag |
388 |
Q |
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|||||||||||||||||||||| ||||||| ||| ||||||| ||||| || ||||||| ||| |||| |||||| ||||| |||||||||||||| |
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| T |
9335119 |
tctatttccaaattcatccttttctttaccaagaactcttctcttttatccaacaaatcttctccattactaaatccaataacactttcctattattgac |
9335020 |
T |
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| Q |
389 |
aaaagctataataagttaga |
408 |
Q |
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|||||||||| || |||||| |
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| T |
9335019 |
aaaagctatattatgttaga |
9335000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 9335321 - 9335242
Alignment:
| Q |
81 |
tacaatttacatacaaacatatatcatccattagaaaatagtggatgaaaacatactataacaccaaaaatatataagtat |
161 |
Q |
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|||||| ||||||||||| |||||| |||||| || || || |||||||||||||||||||||||| ||| || |||||| |
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| T |
9335321 |
tacaatctacatacaaactaatatcacccattaaaatat-gttgatgaaaacatactataacaccaataatgtacaagtat |
9335242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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