View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12024_high_2 (Length: 393)
Name: NF12024_high_2
Description: NF12024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12024_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 43 - 372
Target Start/End: Complemental strand, 5352243 - 5351915
Alignment:
| Q |
43 |
acctgtgtaataccagaatgaataatgtgacaagactattatttcataataatacatggaattttaacaaacttcaacataacattgcaaataaaacaca |
142 |
Q |
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| T |
5352243 |
acctatgtaataccagaatgaataatgtgacaagactattatttcataataatacatggaattttaacaaacttcaacataacattgtaaatcaaacaca |
5352144 |
T |
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| Q |
143 |
ggacaaggcaacaatgcaaataaaattctaaatgtaaataaagaacaaatacgttttattaattgaataaaaatcacgattgaagcaatttatggaactt |
242 |
Q |
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| T |
5352143 |
ggacaaggcaacaatgcaaataaaattctaaatgcaaataaagaacaa-tacatttttttaattgaataaaaatcacgattgaagcaatttatggaactt |
5352045 |
T |
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| Q |
243 |
aaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcg |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5352044 |
aaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcg |
5351945 |
T |
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| Q |
343 |
ccatcaccgttaaattttgctggaggctga |
372 |
Q |
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| T |
5351944 |
ccatcaccgttaaattttgctggaggctga |
5351915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 245 - 372
Target Start/End: Complemental strand, 5345024 - 5344897
Alignment:
| Q |
245 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc |
344 |
Q |
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| T |
5345024 |
agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaattgccaacaacctattcttagcatcttcatcaatcaaatcacc |
5344925 |
T |
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| Q |
345 |
atcaccgttaaattttgctggaggctga |
372 |
Q |
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| T |
5344924 |
atcactattaaattttgctggaggctga |
5344897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 5325075 - 5325119
Alignment:
| Q |
251 |
ttcaatttttgccttgaagttgaagggtaaatgccttcaaggaca |
295 |
Q |
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| T |
5325075 |
ttcaatttctgccttgaagtttaagggtaaattccttcaaggaca |
5325119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 5345433 - 5345382
Alignment:
| Q |
62 |
gaataatgtgacaagactattatttcataataatacatggaattttaacaaactt |
116 |
Q |
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| T |
5345433 |
gaataatgtgacaagactattatttca-aat--tgcatggaattttaacaaactt |
5345382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 5338089 - 5338147
Alignment:
| Q |
245 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaact |
303 |
Q |
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| T |
5338089 |
agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaact |
5338147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 14535283 - 14535375
Alignment:
| Q |
256 |
tttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatca |
348 |
Q |
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| T |
14535283 |
tttttgccttgaagccttagagtaaatgcctgcaaagataaaagaacttgtttcaacttattcttagcctcttcatcaatcaaatcgccatca |
14535375 |
T |
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